Oryza sativa japonica (Japanese rice): 4338689
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Entry
4338689 CDS
T01015
Symbol
CAK-R2, CDKD-1, CDKD, R2
Name
(RefSeq) cyclin-dependent kinase D-1
KO
K02202
cyclin-dependent kinase 7 [EC:
2.7.11.22
2.7.11.23
]
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03022
Basal transcription factors
osa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
4338689 (CAK-R2)
09124 Replication and repair
03420 Nucleotide excision repair
4338689 (CAK-R2)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
osa01001
]
4338689 (CAK-R2)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
osa03021
]
4338689 (CAK-R2)
03019 Messenger RNA biogenesis [BR:
osa03019
]
4338689 (CAK-R2)
03400 DNA repair and recombination proteins [BR:
osa03400
]
4338689 (CAK-R2)
Enzymes [BR:
osa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.22 cyclin-dependent kinase
4338689 (CAK-R2)
2.7.11.23 [RNA-polymerase]-subunit kinase
4338689 (CAK-R2)
Protein kinases [BR:
osa01001
]
Serine/threonine kinases: CMGC group
CDK family
4338689 (CAK-R2)
Transcription machinery [BR:
osa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
4338689 (CAK-R2)
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Capping factors
4338689 (CAK-R2)
DNA repair and recombination proteins [BR:
osa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
4338689 (CAK-R2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pkinase
PK_Tyr_Ser-Thr
ABC1
Haspin_kinase
DUF6853
Motif
Other DBs
NCBI-GeneID:
4338689
NCBI-ProteinID:
NP_001389451
LinkDB
All DBs
Position
5:join(19185653..19185772,19186496..19186794,19186860..19186968,19187656..19187781,19189997..19190232,19190325..19190645,19190805..19190868)
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AA seq
424 aa
AA seq
DB search
MASGDGGDDAGVKRVADRYLKREVLGEGTYGVVFKAVDTKTGNTVAIKKIRLGKYKEGVN
FTALREIKLLKELKDSNIIELIDAFPYKGNLHLVFEFMETDLEAVIRDRNIVLSPADTKS
YIQMMLKGLAFCHKKWVLHRDMKPNNLLIGADGQLKLADFGLARIFGSPERNFTHQVFAR
WYRAPELLFGTKQYGSAVDIWAAGCIFAELLLRRPFLQGSSDIDQLGKIFAAFGTPKSSQ
WPDMVYLPDYVEYQFVSAPPLRSLFPMASDDALDLLSRMFTYDPKARITAQQALEHRYFL
SVPAPTKPSQLPRPPPKGDSGNNKIPDLNLQDGPVVLSPPRKLRRVTAHEGMEVHMHRAD
RTEEHPSGARHMDDMSSQSSRIPMSVDVGAIFGTRPAPRPTLNSADKSRLKRKLDMDPEF
GYTE
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcggcgacggcggcgacgacgcgggcgtgaagcgcgtggcggaccgctacctg
aagcgcgaggtcctgggagagggaacctacggcgtcgtcttcaaggccgtcgacaccaag
actgggaatacagtcgcaataaagaaaatccggctagggaagtacaaggaaggtgtcaat
ttcactgcattgagggaaattaaacttcttaaggagctgaaagattctaatattatagag
ctgattgatgctttcccttacaagggaaacttacatcttgtatttgagttcatggagact
gatttggaagctgtcatacgagataggaacattgtattatctccagctgatacaaaatct
tatattcagatgatgttaaaaggtttagccttctgccataagaaatgggtgctacacagg
gatatgaaaccaaataatttactcattggcgctgatgggcagcttaagcttgctgacttt
ggtctggcgcgcatatttgggagtccagagcggaacttcactcatcaggtctttgcacga
tggtaccgagcaccagaattattatttggcaccaagcagtatggatctgcagttgatatt
tgggctgctggttgtatttttgctgaactgctgcttaggcgaccgtttctccagggttct
agtgacattgatcaacttgggaagatctttgctgcatttggaactccaaagtcttctcaa
tggccggacatggtttatcttccagattatgttgaataccaatttgtctctgcacctcca
cttcgctcattgtttccaatggccagtgatgatgcattggatcttctatcaagaatgttt
acatatgatccaaaagcaagaattacagctcagcaggctctagaacaccggtacttttta
tcagtaccagcgccaacaaaaccatcacagcttccaaggccaccacctaagggtgattca
gggaataacaagataccagacttgaacctgcaggacggccctgttgttctgtccccgcca
agaaagttgcgcagggtgactgcccatgaagggatggaagtccatatgcatcgggcggat
agaacagaagagcatccttcaggggcaaggcacatggatgacatgtccagccagagttct
agaataccaatgtcagttgatgttggagctatttttgggacacgacctgctcctagacca
acgttaaacagtgccgacaagtctcgtttaaaacggaaacttgatatggatccagaattt
ggatacacagagtaa
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