Oryza sativa japonica (Japanese rice): 4338690
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Entry
4338690 CDS
T01015
Name
(RefSeq) SNF2 domain-containing protein CLASSY 4
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
4338690
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
osa03400
]
4338690
DNA repair and recombination proteins [BR:
osa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
4338690
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
DEAD
Motif
Other DBs
NCBI-GeneID:
4338690
NCBI-ProteinID:
XP_015640540
LinkDB
All DBs
Position
5:join(19195050..19197296,19197845..19197997,19198086..19200023)
Genome browser
AA seq
1445 aa
AA seq
DB search
MDRAARLARRGGGVTVAEYRMVRGRRRGGDAGPVVVIDVEDDGEDAADDSAGGGGGAAAA
VKRRVVVPGAVATRTRSRRMAMAQQAPVTPPAAAEEAPSRRRKRKGAASAEAGGGGPSKR
RVRSSGSAGGRGARKRKEAEADEEEAEAEAEEEAEAEAGTPARGESMEVSQVDGGGSSGR
ADDASHNGNGESRVCNADGIDQASEERPSVAGGDLIEEEHYGNGEASVAGGDRIEEHCGN
VEASVANSNRDGGEIIAGEGTEDRGNTELSVVDPVNEELASDEDDYDDEMLEEKLVGDVI
RAYSNGADLDTNGVDWEAEDEMEFADLDTNVVDWEAEDEMEFDDDNDNDADDDGDNFGGD
ADEGDKSVQMHDFSKVETQDLVSHNVNVSEVRPHEDEEAIKDEMESKGKGSLSFNEGSSY
IEILDSDEEVKVVNDTGNALRRKPLVPAKLPIVPSCVAWRTRSSWGMKEERISYNTYFEV
LSDEPKEDDDDTEVELDDEEDDENDDDCNSASCDEEDEEEEEEREEEEEEAQRRKQKKGI
DSSDDEMIDDAVDCGIDWEEDYPEVDFTRPLTFQKDGSEAPVGSEAFTEQQKRSRFTWEL
ERRKKLKLGMMTNHRLYERDLESDSNSSDSSQNRKNGCQGSGDHRTGRKRKNPLSKSGKK
SSRMLKRQSLMKLLMDKMCSNDDGKSTPFDQKPQIEYSFKDLHPLVFSFGDDDPSPTDRS
EQDAALDMLWADLDFTLESENIGTYYDDEGQEDSLLDHALAPITPCSRGKHEFIIDEQIG
IRCKYCSLVNLEIRFILPLLASNFAEKPAWRNSSCLKTALMCPDLYEQTGTGDGQSQDFH
INGTVWDLIPGVITDMYQHQREAFEFMWTNLVGDIRLNEIKHGAKPDVVGGCVICHAPGT
GKTRLAIVFIQTYMKVFPDCRPVIIAPRGMLFAWEQEFKKWNVNVPFHIMNTTDYSGKED
RDICRLIKKEHRTEKLTRLVKLFSWNRGHGVLGISYGLYMKLTSEKVGCTGENKVRTILL
ENPGLLVLDEGHTPRNERSVIWKTLGKVKTEKRIILSGTPFQNNFLELYNILCLVRPRFG
EMFLTKTRVGRRHCVSKKQRDKFSDKYEKGVWASLTSNVTDDNAEKVRSILKPFVHIHNG
TILRTLPGLRECVIVLKPLPLQKSIIRKVENVGSGNNFEHEYVISLASTHPSLVNAINMT
EEEASLIDKPMLERLRSNPYEGVKTRFVMEVVRLCEALKEKVLIFSQFIQPLELIKEHLR
KIFKWREGKEILQMDGKILPRYRQNSIEVFNNPDSDARVLLASTRACCEGISLTGASRVV
LLDVVWNPAVGRQAISRAFRIGQKKFVYTYNLITYGTGEGDKYDRQAEKDHLSKLVFSTE
DEFSNVRNMLSKAEMEHCSKLISEDKVLEEMTSHDQLKGMFLKIHYPPTESNIVFTYNQI
APELS
NT seq
4338 nt
NT seq
+upstream
nt +downstream
nt
atggatcgcgccgcgcgcctcgcccgccgcggcggcggcgtgaccgtggctgaataccgc
atggtgcggggccgccgccgcggaggcgacgcggggccggtggtggtcatcgatgtcgaa
gacgacggggaggacgctgctgatgactccgccggcggtgggggtggagcggcggcggcg
gtgaagaggagggtggtggttccgggggccgtggcgacgcggacgcgatcgcggaggatg
gcgatggcgcagcaggcgcccgtcacgccgccggctgcggcggaggaggcgccgagcagg
aggaggaagaggaagggggcggcgagtgcggaggcgggtggcggagggccgtcgaagcgc
cgcgtgcgatcctcggggtcagcgggcgggcgtggtgcgcgcaagcgcaaggaggcggag
gcggatgaggaggaagcggaagcagaggctgaggaggaagcggaagcagaggcggggact
cccgctcgcggagaatcgatggaggtgtcacaggttgacgggggtggcagcagcgggcga
gccgatgacgcttcgcacaatggtaatggcgagtctcgcgtgtgtaacgcggatggcatt
gatcaggcaagcgaggagcgtccaagtgtcgctggtggggatctaattgaggaggagcac
tacgggaatggggaagccagcgtcgctggtggggatcgaattgaggagcactgcggtaat
gtggaagccagtgtcgccaattcgaatcgtgatggcggtgagatcatcgctggggagggc
acagaggatcgtgggaacacggagttatcagtggtggatccagtgaatgaagagttggct
tccgatgaggatgattacgacgatgaaatgttggaggaaaagcttgtcggagatgtcatt
cgtgcttacagcaatggcgctgatttggatacaaatggagtggactgggaagccgaggat
gagatggaatttgctgatttggatacaaatgtagtggactgggaagctgaggatgagatg
gaatttgatgatgataatgataatgatgctgatgacgacggtgataattttgggggtgat
gcggatgaaggtgacaaatctgtacaaatgcatgacttttctaaggtggaaacacaagat
ttggtgagccacaatgttaatgttagtgaagtgaggcctcatgaggatgaggaggctatc
aaggatgagatggagtcaaagggaaaaggatctctcagttttaatgaagggagctcctat
attgaaattcttgactctgacgaggaagtcaaagtggtcaatgacacagggaatgccttg
agaaggaagccattagtaccagcgaagctaccgattgtgccatcttgtgttgcatggaga
actcggtcatcatggggtatgaaggaggagaggatttcttacaatacatatttcgaggta
ttgtctgatgagccaaaagaggatgatgatgacactgaagtggaattggatgatgaggag
gacgatgaaaacgatgacgattgcaatagtgctagctgtgatgaagaagatgaagaggaa
gaagaggaaagagaggaggaagaggaagaagctcaaaggagaaagcaaaagaaagggatt
gactcatctgatgatgagatgattgatgatgctgtagattgtggcattgattgggaggag
gattacccagaggttgattttactcggccacttacctttcagaaagatggcagtgaggcc
cctgtgggcagcgaggcttttacggagcaacagaagagatcgcgatttacatgggagctt
gagaggaggaaaaaactgaagcttggcatgatgacgaatcatcgtttgtatgaacgagac
ctggaatcagattccaactcatcagattctagtcagaatcgaaaaaatggatgtcaaggg
agtggtgatcacagaactgggaggaaaaggaagaatccattatcaaaatctggtaagaaa
tccagccgcatgttaaagaggcagtctcttatgaagcttctgatggacaagatgtgtagc
aatgatgatgggaagtctactccttttgaccagaagccccagattgagtatagtttcaag
gatttgcatccgttggttttttcatttggggacgatgatcctagtccaactgataggtca
gagcaagatgctgcacttgatatgctatgggctgatttagacttcactttagagtcagag
aacattgggacttattatgatgatgagggccaagaggacagtctgctagatcatgcactt
gctcctattacaccttgttctagagggaagcatgaatttattattgatgagcaaatagga
atcagatgcaaatactgctccttggtaaatctggaaatcagatttattttaccattgctg
gcctccaattttgcagagaaacctgcatggcgaaacagctcttgtttgaagactgcgttg
atgtgtcctgatctttatgaacaaacagggactggtgatggacaatctcaagatttccat
ataaatggaactgtgtgggatctcattcctggcgtcattactgatatgtatcagcatcaa
cgtgaggcatttgagtttatgtggacaaatctagtgggtgatattaggcttaatgaaata
aagcatggggctaagcctgatgttgttggaggatgtgtgatctgtcatgccccagggaca
ggaaagactcgtttggctattgtgtttatccagacatacatgaaggtgttcccagactgc
cgaccggtgattattgcacctcgtgggatgctgtttgcttgggaacaagagttcaagaaa
tggaatgtcaacgttccttttcatataatgaacactactgattactctgggaaggaagac
agagatatatgtagattaataaagaaagagcatcggactgaaaagttgactaggcttgta
aaactgttttcatggaacaggggtcatggtgttcttggaattagttatggtctatatatg
aaactaacatctgaaaaggttggctgcactggagaaaacaaagtgagaactattcttctt
gagaaccctggtttgcttgttctcgatgaagggcacacacctaggaatgagcgcagtgtt
atttggaagacactaggaaaagttaaaaccgagaagcgtataattctatctggaactcct
ttccaaaataattttcttgagctttacaatattctctgtttggtgaggcctaggtttggt
gaaatgtttttgactaaaacaagagtgggtcgaaggcactgtgtctcaaagaagcaacgg
gataaattttctgataaatatgagaaaggagtttgggcttccttaactagtaatgtaact
gatgataatgcagaaaaggtaagatcaatactgaaaccatttgttcatatccataatggg
actattcttcgaactcttccggggctcagagagtgtgtgatagttctgaaacctctaccg
cttcaaaagagtatcattagaaaggtagaaaatgttggatctggtaacaattttgaacat
gagtatgttatttctttagcctccacacatccttcacttgtaaacgcaattaacatgacg
gaagaagaagcttcccttattgataaacctatgcttgaaagattaaggtctaatccttat
gaaggagtaaaaacaaggtttgtaatggaagttgttcgtttgtgtgaagcattgaaagaa
aaggtattgatttttagtcaatttattcagccattagaattgataaaggaacatcttcgt
aagattttcaaatggagagaaggaaaagagattctccaaatggatgggaagatcctcccg
agatatcgtcaaaattcaattgaggttttcaataatccggatagtgacgcgagggtgtta
cttgcatctacaagagcttgttgtgaagggattagcctaacaggggcttctagagttgtt
cttctagatgttgtctggaatccagctgttggaaggcaagctatcagcagagcatttagg
ataggacagaagaaatttgtatatacatacaatttaataacttatggaacaggtgaaggt
gacaaatatgataggcaagcagaaaaggaccacttgtccaagttggtcttctctacagaa
gacgagttcagtaatgttaggaacatgctttcaaaagctgaaatggagcactgttctaag
ttgatatccgaggataaggttctggaggaaatgacttcccatgaccagctgaaaggcatg
tttttaaagattcattatccaccaactgagtcaaacattgtttttacttacaaccagatt
gctcctgagttaagttaa
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