Oryza sativa japonica (Japanese rice) (RefSeq): 4338726
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Entry
4338726 CDS
T01015
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB7
KO
K03015
DNA-directed RNA polymerase II subunit RPB7
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03020
RNA polymerase
osa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
4338726
09124 Replication and repair
03420 Nucleotide excision repair
4338726
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
osa03021
]
4338726
03019 Messenger RNA biogenesis [BR:
osa03019
]
4338726
03400 DNA repair and recombination proteins [BR:
osa03400
]
4338726
Transcription machinery [BR:
osa03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Pol II specific subunits
4338726
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
4338726
DNA repair and recombination proteins [BR:
osa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
4338726
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1
SHS2_Rpb7-N
Motif
Other DBs
NCBI-GeneID:
4338726
NCBI-ProteinID:
XP_015639700
UniProt:
A0A0P0WLZ8
Q6ATY6
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All DBs
Position
5:complement(19488425..19490604)
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AA seq
177 aa
AA seq
DB search
MFFHIVLERNMQLHPRHFGPHLRDKLVSKLIKDVEGTCSGRHGFVVAITGVEDVGKGLIR
EGTGYVTFPVKYQCVVFRPFKGEILEAVVTMVNKMGFFAEAGPVQIFVSNHLIPDDMEFQ
SGDVPNYTTSDGSVKIQKDSEVRLKIIGTRVDATEIFCIGTIKDDFLGVISDPGAAV
NT seq
534 nt
NT seq
+upstream
nt +downstream
nt
atgttcttccacatcgtgctggagcggaacatgcagctgcacccgcggcacttcggcccg
cacctccgcgacaagctcgtctccaagctcatcaaggacgtcgagggcacctgcagcggg
cggcatgggttcgtggtggcgatcacgggggtggaggatgtcggcaaggggctcatcagg
gagggcacgggctacgtcaccttcccggtcaagtaccagtgcgtcgtcttccgccccttc
aagggcgagatcctggaggccgtcgtcaccatggtcaacaagatggggttcttcgcggag
gctgggcctgtgcagatcttcgtgtccaaccatttgattcctgatgatatggagttccaa
tctggggatgtgccaaattatactacttctgatggatcggtgaaaattcagaaagatagt
gaggttcggttgaagattattgggacacgtgttgatgcaacagaaattttttgcattggc
acaataaaagatgacttcctgggcgttatcagtgatcctggtgcggcagtgtaa
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