Oryza sativa japonica (Japanese rice): 4338850
Help
Entry
4338850 CDS
T01015
Name
(RefSeq) F-box protein SKP2A
KO
K03875
F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2)
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
4338850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
osa04121
]
4338850
Ubiquitin system [BR:
osa04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
4338850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_6
LRR_At5g56370
LRR_4
F-box-like
LRR_Zer-1
LRR_8
F-box
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
4338850
NCBI-ProteinID:
XP_025881445
LinkDB
All DBs
Position
5:join(20953779..20954038,20954782..20955130,20955205..20955346,20955639..20956018)
Genome browser
AA seq
376 aa
AA seq
DB search
MVSGRSANGELDACFRSLMLSISSGRGQAEGGGAMPTLSGWKDLPIELLLRIMSIIGDDR
MLVVASGVCTGWRDALGWGLTNLSLSRCQQNMNNLMISLAHKFTKLQVLTLRQNIPQLED
SAVEAVSNYCHDLRELDLSRSFRLSDRSLYALARGCPQLTKLNISGCSNFSDTALTYLTF
HCKNFKCLNLCGCGKAATDRALQAIARNCGQLQSLNLGWCEDVTDKGVTSLASGCPDLRA
LDLCGCVLITDESVIALATGCPHLRSLGLYYCQNITDRAMYSLANSRVKSKRRRWDSVRS
SSSKEEDGLANLNISQCTALTPPAVQAVCDSFPALHTCPGRHSLIISGCLSLTSVHCACA
LHPHRAGRTMVPSHAY
NT seq
1131 nt
NT seq
+upstream
nt +downstream
nt
atggttagtgggaggtcagcaaatggggaattggatgcatgcttcagaagcctcatgctt
tcgatcagcagcgggagggggcaggctgaaggtggtggtgcaatgccaaccttgtcaggc
tggaaggaccttcctattgagctgcttctgcggatcatgtcgataattggagatgaccgg
atgcttgtcgtggcatccggtgtttgcactggctggcgcgacgcgctgggatgggggctt
actaatctttccctctcacggtgccagcagaacatgaataacttaatgatatcacttgct
cacaagttcacgaagcttcaagttctcactcttcgccagaacatacctcagcttgaagac
agtgcagtagaggccgtttccaactactgtcatgatctacgtgagttagaccttagcaga
agttttaggcttagtgaccgttccttgtatgcattagcccgtggctgtcctcagcttaca
aaattaaacattagtggatgttccaacttcagtgacactgccttgacctatcttactttc
cactgtaaaaattttaagtgcttgaatctatgtggttgtgggaaggcagcaaccgacaga
gctttgcaggccatagcccgtaattgcggccagctgcaatcattgaacttaggttggtgt
gaggatgtcacagataagggagtgaccagcttggcatcagggtgtcctgatctcagggct
ctggacttgtgtggttgtgttcttataacagatgagagtgtgatcgctcttgccactggg
tgtccacacctgcgatctttaggcttgtactactgccagaacatcaccgaccgagccatg
tactccctcgcaaacagccgggtcaagagcaaacgcaggaggtgggacagtgtgaggagc
agcagctctaaggaagaagacggtctcgcaaacctgaacatcagccagtgcacggccctg
acacccccagcggtccaggcggtctgcgactccttcccggccctccacacttgccctggg
aggcactccctgatcatcagtggctgcctcagcctgacgtctgtccactgcgcctgcgcc
ctccacccgcaccgtgctggaagaaccatggtgcctagccacgcatactga
DBGET
integrated database retrieval system
