KEGG   Oryza sativa japonica (Japanese rice): 4339144
Entry
4339144           CDS       T01015                                 
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X2
  KO
K12605  CCR4-NOT transcription complex subunit 2
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    4339144
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4339144
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     4339144
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     4339144
SSDB
Motif
Pfam: NOT2_3_5_C
Other DBs
NCBI-GeneID: 4339144
NCBI-ProteinID: XP_015638214
LinkDB
Position
5:join(24031015..24031149,24032990..24033095,24033229..24033350,24033433..24033496,24033587..24033778,24034306..24034515,24034593..24034691,24034830..24034897,24034988..24035062,24035267..24035812,24035921..24035973,24036044..24036085,24036195..24036339,24036422..24036532,24036650..24036661)
AA seq 659 aa
MRFCSIKGVEPLCLAAILGLFTSQPSHQSKRSRMGGRKSPSKSTQSSSSGARSNLPVSTG
KPLTPTFSGQSGSVSGFRHPGSLAPRGSSMTGSSSLGVQPPRGSISGAWFPPNSLQASIY
QVGYPALSNRGGMHVGGSPVFTAAPVCGNFGPRITYVASVAGGGNIGRTISSAGMSMPTV
ASPVNLSGSGALNIRGSNQMGGTHQQGLPAMNMLGSSSSAPGGTLSKNQLQAGSSSSGSP
GMRHDGNFGENSLFDINDFPQLVGRPNSAGNIQGLYGPLRQQAFGINAVQQNQEFRIHNE
DFPALPRLEGMELHRKDHLPKNANIMQAQHYPMGKSSGFNTGSSCPPRKQHKQTANSVQN
TGPENVGPKPVNSPRLPLNPRPREQVIQQNHEPQAQKSVRLQSSSGPESHKVQSPKSSQR
TDTTPESYKVQSPKPSQRTDTAPESHKVQSPKSSQRTDTAPDPYDPYGLHGLLRVMKLKE
EGPASLALGIDLTTLGLDMNSSDNLYKTFGSPWSSEPVKEEYSYEIPDCYSSMQPPPLQA
LHFLRFHLMTLFYIFYSMPQDAAQLYAANEICKYGWVYHKELRQWVKRAPNTTPLVKTTT
YEQGLCYLFDANIWDAIPKDNFILRYDDIEKIPALPPLLPATQNPATQNGSVRINKPLQ
NT seq 1980 nt   +upstreamnt  +downstreamnt
atgcggttttgttccataaaaggggttgaacccctatgcctagccgcaattcttggtctt
ttcacctctcaaccttctcaccaaagtaaacgctcaaggatgggcggccgcaaatctcca
tcaaagtcgacacagtcaagcagtagtggtgccagatcaaaccttccagtctcaacagga
aagccgttgacaccgaccttttctggtcaatctggatcagtttcaggttttcgtcatcct
ggttcactagcaccaaggggttcctcaatgactggtagttcatcccttggggttcaacca
cctaggggtagtatttctggtgcttggtttcctccaaatagtcttcaagcatccatttat
caggtcgggtatcctgctctcagcaaccgaggaggtatgcatgttgggggaagtcctgtt
tttactgctgctccagtttgtgggaattttggcccgcgaataacttatgtggctagcgtt
gcgggtgggggcaacattgggagaaccataagctctgccggaatgtctatgcctactgtt
gcatcccctgtgaatttgtctggaagtggggctcttaatatccgaggatcaaaccaaatg
ggtggtactcatcaacaaggattgccggctatgaatatgcttggaagctctagttcagca
cctggaggaacactatctaagaaccaattgcaggcaggaagcagttcgtctggttctcca
ggaatgcgacatgatggtaactttggtgaaaattctctatttgacatcaatgattttcct
caattagttgggcgacctaattctgctggaaatattcaggggttatatggacctctaaga
caacaagcatttggtattaatgctgttcagcaaaaccaggaatttagaatccataatgag
gacttcccagctttaccaagattggaaggtatggagttgcatcgcaaggatcatcttcct
aagaatgcaaatattatgcaagcacaacattatcctatgggcaaatcatctggctttaac
acgggcagcagttgtccaccccgtaaacaacataagcagacagctaattcggttcaaaat
actgggcctgaaaatgttggaccaaagccagtaaattctccaaggttgcctttaaatccg
aggcctcgtgaacaagttatccagcaaaatcatgaaccacaggctcagaagtcagttagg
ctgcagtcatcttccggcccagagtctcacaaggttcagagtcccaagtcttctcagaga
actgataccacaccagagtcttacaaggttcagagtcccaagccttctcagagaaccgat
accgcaccagagtctcacaaggttcagagtcccaagtcttctcagagaactgataccgca
ccggatccatatgatccatatggcttacatggactactgagggtaatgaagttgaaagag
gagggaccggcatctcttgctttagggattgatttgacaacactagggttggatatgaac
tcttcagataatctttacaagacatttggctctccttggtcaagtgagccagttaaagaa
gagtattcttatgaaattccggattgctactcttctatgcagcctccacccctgcaagcg
ttgcattttctgaggtttcacctcatgacactattctacatcttctacagtatgccacag
gatgcagctcagttatatgccgcgaatgaaatatgcaaatacgggtgggtttaccacaaa
gagctgcgtcagtgggttaaaagagctcctaatacgacccctctcgtcaaaactacaact
tatgaacaaggactctgctatctttttgatgccaacatttgggatgcaattcctaaggac
aactttattctccgttatgacgatatcgagaagatacctgcccttcctccccttcttcct
gccacccaaaatcctgccacccaaaatggtagtgtaagaataaacaagccattgcagtag

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