Oryza sativa japonica (Japanese rice): 4339276
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Entry
4339276 CDS
T01015
Name
(RefSeq) uncharacterized protein
KO
K03139
transcription initiation factor TFIIF subunit beta [EC:5.6.2.-]
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
4339276
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
osa03021
]
4339276
Transcription machinery [BR:
osa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIF
4339276
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIF_beta
TFIIF_beta_N
Tau95
Motif
Other DBs
NCBI-GeneID:
4339276
NCBI-ProteinID:
XP_015638167
UniProt:
B9FL24
Q6L4V9
LinkDB
All DBs
Position
5:complement(join(25377287..25377406,25377557..25377706,25378049..25378120,25378207..25378337,25379063..25379171,25379618..25379815))
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AA seq
259 aa
AA seq
DB search
MGEEAKYLETARAERSVWLMKCPPVVSHAWQGAVSSSDAAGSNPNPVVAKVVLSLDLLRS
EEPSLQFKMEMAQTNTGNTPKSYSLNMSKDFVPMCVFSESNQGKLSCEGKVEHKFDMKPH
SDNLVNYGKLCRERTQKSMIKTRKVQVIEDHRMSLIPLPGMVGLIPSGSKEKKKQTPTKP
SDAKRIRRDRRELENIIFKLFERQPNWALKALVQETDQPEQFLKEILNDLCFYNKRGPNQ
GTHELKPEYKKSTGDTDAS
NT seq
780 nt
NT seq
+upstream
nt +downstream
nt
atgggcgaggaggccaagtacctcgagacggcgcgggccgagcgctccgtgtggctgatg
aagtgccccccggtcgtctcgcacgcctggcagggcgccgtgtcctcctccgacgccgcc
ggctccaaccctaaccccgtcgtcgccaaggtcgtcctctcccttgacctcctccgctcc
gaggagccctccctccagttcaagatggagatggctcaaactaacactggcaatacacca
aagagttactccttgaatatgtccaaggattttgtaccaatgtgtgttttctctgagtct
aaccaagggaaactttcatgtgaaggaaaagtcgagcataaatttgacatgaagcctcac
agtgataatttggtgaactatggaaagttatgccgtgaaaggacacaaaagtccatgatc
aaaactagaaaagtgcaggtaattgaggatcacagaatgagcctgataccgttgcctggc
atggttggtctcataccttctggttctaaggagaagaagaagcaaacaccaaccaaacca
tctgatgcaaaaagaatacgtagggatcgcagggaactggaaaatattatattcaagctt
tttgaaagacagcccaattgggcactaaaggcgctggtgcaagaaactgaccagccagag
caattcctgaaggagattctgaatgatctgtgtttttacaacaaacgaggaccaaaccag
ggaacgcatgagctcaagcctgagtacaagaaatctacaggggacactgatgcttcttga
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