KEGG T01015: 4339293

Oryza sativa japonica (Japanese rice): 4339293

Entry

4339293           CDS       T01015

Name

(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog isoform X1

K10683

BRCA1-associated RING domain protein 1

Organism

osa Oryza sativa japonica (Japanese rice)

Pathway

osa03440

Homologous recombination

Brite

KEGG Orthology (KO) [BR:osa00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    4339293
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4339293
   04121 Ubiquitin system [BR:osa04121]
    4339293
   03036 Chromosome and associated proteins [BR:osa03036]
    4339293
   03400 DNA repair and recombination proteins [BR:osa03400]
    4339293
Messenger RNA biogenesis [BR:osa03019]
Eukaryotic type
  mRNA processing factors
   3' end processing
    Negative regulators of mRNA 3' end processing
     4339293
Ubiquitin system [BR:osa04121]
Ubiquitin ligases (E3)
  Multi subunit type E3
   BRCC complex
    4339293
Chromosome and associated proteins [BR:osa03036]
Eukaryotic type
  Centrosome formation proteins
   Centrosome duplication proteins
    Regulators of centriole replication
     4339293
DNA repair and recombination proteins [BR:osa03400]
Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    BRCA1-core complex
     4339293

SSDB

Motif

Pfam:

BRCT zf-C3HC4_2 BRCT_2 zf-HC5HC2H zf-RING_2 zf-RING_UBOX zf-C3HC4 zf-C3HC4_3 zf-C3HC4_4 zf-RING_5 RTT107_BRCT_5 zf-RING_6 zf-HC5HC2H_2 PTCB-BRCT zf-RING_10 zf-rbx1 PHD_NSD zf-Nse

Other DBs

NCBI-GeneID:

4339293

NCBI-ProteinID:

XP_015638240

LinkDB

Position

5:complement(join(25473669..25474007,25474386..25474504,25474600..25474765,25474865..25474991,25475066..25475166,25475295..25475481,25475576..25475676,25475796..25476770,25476901..25476999,25477076..25477548,25477883..25477996,25478406..25478476,25478591..25478644,25478898..25478953))

AA seq 993 aa
MADTGSLEKMGRELKCPICLSLLSSAVSISCNHVFCNDCLTESMKSTSSCPVCKVPFRRR
EMRPAPHMDNLVSIFKSMEAAAGTNVVSTQEAPVVKLADGSDCVNSGKNSKRSQKSLTRK
RKVTSEMEKNTAKDATASASQPTTKPSFSTNKRIQVKPFPESETPIRAEKIMKPEEPKNN
LNNDVEGKNKAVASGQPGSPSLSPFFWLREQEEQEGCTAETLSETQSLDTPLRHNAPSFS
DIKDSDDEIPLNTTPNSKAAATELFDSEIFEWTQRPCSPELYSTPLKKQSKAKSKLDQIE
EKGDEEDVHIGGSFDKLGNASNAAQLVNTKATKQKRKKTSPSNKNSAKLSNRAEPCIKKS
DANQQGSNRRKSAALKSCQKSSSAVGRNTSGRRNKASSNSKPIHGSSDNSPESYLPKEGL
DVEAPDKPLSERIQNLEKTSRRKGSARKLEMAGKTISDTTEKNSEPRSKRVRRMSDHAIA
KPVEVPSGSGNETEIPQLHTLTKGSIQRKSSNARRHSKVCGEQEGKNKLENTTMTPIILH
GKCQNKEAVCTAPSVRTASVKYKQAKFSEQPDCFGTENFGNLQACPARNVLLKKCEVSTL
KVSCAFCQTDVITEESGEMVHYQNGKQVPAEFNGGANVVHSHKNCLEWAPDVYFEDDSAF
NLTTELARSRRIKCACCGIKGAALGCFEMSCRRSFHFTCAKLIPECRWDNENFVMLCPLH
RSTKLPNENSEQQKQPKRKTTLKGITGFSRSSQIGSNQDCGNNWKWPSGSPQKWVLCCSS
LSSSEKELVSEFAKLAGVPISATWSPNVTHVIASTDLSGACKRTLKFLMAILNGRWIVSI
DWVKTCMECMEPIDEHKFEVATDVHGITDGPRLGRCRVIDRQPKLFDSMRFYLHGDYTKS
YRGYLQDLVVAAGGIVLQRKPVSRDQQKLLDDSSDLLIVYSFENQDRAKSKAETKAADRR
QADAQALACASGGRVVSSAWVIDSIAACNLQPL

NT seq 2982 nt +upstreamnt +downstreamnt
atggcggacacggggagcctggagaagatggggcgagagctcaagtgccccatctgcctg
agccttctcagttcggcggtatccatctcctgcaaccacgtcttctgcaatgattgcctc
acggaatcgatgaaatccacgtcgagctgccccgtgtgcaaggtcccgttccgacgacga
gaaatgcgaccagcacctcacatggacaatctggtcagcattttcaaaagcatggaggct
gcagcaggtaccaatgttgtctcaacacaggaggctcctgtggtaaaacttgcagatgga
tcagattgtgtcaacagcgggaaaaattccaaaaggtcacaaaaatcattgacacgaaaa
aggaaggtaacatccgagatggaaaaaaatacagcaaaggatgctacagcttctgcatcc
caacctactacaaagccttccttctctactaacaaaagaatacaagtgaaaccattccct
gaatctgagacaccaataagagctgagaagattatgaagcctgaagagccaaaaaataat
ctgaataatgatgttgaaggaaagaataaagcagtggcatcgggtcaacctggaagtcct
tcattgtcaccctttttttggctaagggaacaagaagaacaagaaggctgtaccgctgag
acgttaagtgaaacgcaatctttagacacacccttgcgtcataatgcaccctcttttagc
gatattaaagattctgatgacgaaatccctttaaatacaactccaaatagcaaagctgcg
gctacagaactctttgacagtgaaatatttgaatggacccagagaccatgctctcctgaa
ttgtattccactccattgaaaaagcagagtaaagctaagagtaaactagatcaaattgaa
gagaagggtgatgaagaagatgtgcatattggtggttcatttgataagctgggtaatgca
agtaatgcagctcagcttgtcaatacaaaagcaacaaagcagaagagaaagaaaacaagt
cccagtaacaaaaacagtgcaaaattgtccaatcgtgctgagccctgcataaaaaagtct
gatgccaatcaacaaggttcaaatagacgtaaaagtgctgccctaaaatcttgtcagaaa
agcagcagtgctgtagggaggaatacttcaggtagaagaaacaaggcctctagcaacagc
aagccaattcatggctctagtgataactccccagagtcatatcttcctaaggagggtttg
gatgttgaagcacctgacaaacccctttctgaaaggatccaaaacttggagaaaactagt
cgacgaaagggaagtgcaaggaagctggaaatggcagggaaaactatttcagatactaca
gagaagaatagtgagccaagaagtaagagagtcagaagaatgtctgaccacgctatagct
aaaccggttgaagttccttcaggatctggaaatgaaacagaaataccacagcttcacacc
ctcacaaaaggcagcattcaacgcaaatcctccaacgctagaagacatagcaaagtttgt
ggagaacaggaaggtaagaataaacttgagaacacgacaatgacacctattattttacat
gggaaatgccaaaataaagaggcagtatgtacagctccttcagtaaggactgcatctgtt
aagtacaagcaagcaaaatttagcgaacaaccagattgttttggaacggagaactttgga
aaccttcaagcatgccctgcacgtaatgttttactgaagaagtgtgaggtatctactttg
aaggtttcctgtgctttctgccagaccgatgtcatcacagaggagtctggagagatggtt
cattatcaaaatgggaaacaagtccctgcagagttcaatggaggagccaatgtggtgcac
tctcacaagaactgccttgagtgggctcctgatgtctacttcgaagatgattctgccttt
aatcttacaactgaattggcgagaagcagacggatcaaatgtgcttgctgtggaattaaa
ggagctgcacttggatgctttgagatgagttgtcggagaagtttccacttcacctgtgct
aaactaatcccagaatgcagatgggataatgaaaattttgtgatgttatgccctctacat
cggtctacaaagttacccaatgaaaattctgaacagcaaaagcaacctaaaaggaaaaca
acactcaaaggaataaccggcttttccaggtcatctcaaataggatccaatcaagattgt
ggtaataactggaaatggccatctggatcaccacagaagtgggttctctgctgctcatca
ctttctagttctgagaaggaacttgtatcagaatttgcaaagttagctggcgtgcctatt
tcggcaacttggagtccaaatgttacccatgttattgcatcaactgatctctctggtgct
tgcaaacggacgctgaagtttctcatggcaatcttgaatggcagatggattgtctccata
gattgggttaaaacttgcatggagtgcatggaaccaattgatgagcacaaatttgaagtc
gctactgatgttcatgggatcactgatggtcctaggttaggaagatgcagggttattgac
aggcaacctaagctgttcgacagcatgaggttctacctccatggggactacacaaaatcc
tacagaggctacctgcaagatctcgtggttgcagcaggtggaatagttcttcagaggaag
cccgtatcaagagaccagcaaaagcttcttgatgacagctctgacctcctcatcgtttac
agcttcgagaatcaagatagggcaaaatccaaggccgaaaccaaggctgctgatcgcagg
caggctgatgctcaggctcttgcttgcgcttctggaggcagagttgtgagcagtgcatgg
gtgattgactcaattgcagcctgcaatctgcaacctctttga

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