Oryza sativa japonica (Japanese rice) (RefSeq): 4339481
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Entry
4339481 CDS
T01015
Name
(RefSeq) lys-63-specific deubiquitinase BRCC36
KO
K11864
BRCA1/BRCA2-containing complex subunit 3 [EC:3.4.19.-]
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
4339481
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
osa01002
]
4339481
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
osa04121
]
4339481
03036 Chromosome and associated proteins [BR:
osa03036
]
4339481
03400 DNA repair and recombination proteins [BR:
osa03400
]
4339481
Enzymes [BR:
osa01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.-
4339481
Peptidases and inhibitors [BR:
osa01002
]
Metallo peptidases
Family M67
4339481
Ubiquitin system [BR:
osa04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
BRCC complex
4339481
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
JAMM
4339481
BRISC complex
4339481
Chromosome and associated proteins [BR:
osa03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
BRISC complex
4339481
DNA repair and recombination proteins [BR:
osa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-A complex
4339481
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
JAB
BRCC36_C
Prok-JAB
UPF0172
Motif
Other DBs
NCBI-GeneID:
4339481
NCBI-ProteinID:
XP_015640530
UniProt:
B9FLE7
Q0DGB3
LinkDB
All DBs
Position
5:26930553..26935799
Genome browser
AA seq
420 aa
AA seq
DB search
MSLTEVRIGEEVWLTCLSHALTTETEEVMGLLFGDIKHSSRGGVTALIWGASPQMRCERK
KDRVEVNPELLAAATAQAESLSATIGEKTRVIGWYHSHPHITVLPSHVDVRTQAMFQLME
PGFVGLIFSCFSEDAQKVGKIQVIAFQSLGGNQQSVVPVNDPVINLESSWSSLDDTSHPA
LIEGIEQDTGDSKSSRNSKVWAKSSDVDFYPHFDANHSAKHQSKENAIVAYDPNNAPETP
VDLDESDMTPSIQEALHRSNMDISGAEYVRKEVPLYVFPTRHLLKLDTTLTSYCDMQHVV
FEEEKSAYNQAMHQNIRDGKIHPLTSIHHASTYNSSLCKLMEYCLSPAITVLQDRLKENE
LRLSMLMEEAKQLEAENQSMRNDSPRRLMYHGTSGTSSLMAQDKQMSPRSPSGTGRRKAS
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctgacggaggtcaggatcggggaggaggtgtggctcacctgcctctcccacgcc
ctcaccaccgagacggaggaggtcatgggcctcctcttcggcgacatcaagcattcgagc
aggggcggggtgactgctctgatatggggggcgtcgccgcagatgaggtgcgagcggaag
aaggacagggtggaggtcaaccccgagctgctcgcggcggcgacggcgcaggccgagagc
ttgtcggccaccatcggcgagaaaacgagggtgattggatggtaccactcgcacccgcat
atcaccgttctgccttcccatgtagatgttcggacccaggcaatgtttcagttgatggag
ccaggttttgtgggtctgatattctcttgttttagcgaagatgctcaaaaggttggaaaa
atccaagtgattgcttttcagtcacttggtggaaatcagcaatctgttgttcctgttaat
gatccagtcattaaccttgaatcatcttggagttcgttggatgatacctcacatccggca
ttgattgaaggcattgaacaagacacgggggattctaaatcttcaagaaatagcaaggtg
tgggcaaaatcttctgatgtggatttctatcctcattttgacgccaatcactcagcaaaa
catcaatccaaagaaaatgctatagttgcatacgatcccaataatgcacctgagacccct
gttgatctagatgaatcagatatgaccccaagcatccaggaggcgttgcacaggtcaaac
atggacattagtggtgcagaatatgtaagaaaggaggtgccactttatgtatttccgacc
aggcatctgctaaagctggacaccacattaacttcttactgtgatatgcaacatgtcgtt
ttcgaagaggaaaaatcagcatataatcaagccatgcatcaaaatattcgtgatgggaag
atccacccacttacatctattcaccatgcatctacatacaactcatctctctgcaaatta
atggaatattgtttgagccctgctataactgtacttcaggatcgtctgaaggaaaatgaa
cttcggttatctatgctaatggaggaggctaaacaacttgaggcagagaaccagagcatg
agaaatgattctcctcgtcgcttgatgtatcatgggactagtggcaccagttctctgatg
gcacaggataagcaaatgagccccagaagtcctagcggcaccggccggagaaaggcttcc
tga
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