KEGG   Oryza sativa japonica (Japanese rice): 4339488
Entry
4339488           CDS       T01015                                 
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1
  KO
K14962  COMPASS component SWD2
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    4339488
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4339488
   03036 Chromosome and associated proteins [BR:osa03036]
    4339488
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     4339488
Chromosome and associated proteins [BR:osa03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     4339488
    COMPASS/SET1 complex (yeast)
     4339488
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 Beta-prop_WDR3_1st Beta-prop_IFT122_1st WD40 WD40_Prp19 Beta-prop_EML_2 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR36-Utp21_2nd WD40_Gbeta Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_WDR3_2nd ANAPC4_WD40 WDR55 Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_TEP1_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_Aladin Beta-prop_TEP1_C NBCH_WD40 Beta-prop_SPT8 Beta-prop_WDR19_1st DSE1_N ASA1 Beta-prop_ACSF4 Beta-prop_NOL10_N TRM82_WD eIF2A Tricorn_2nd WD40_MABP1-WDR62_1st Beta-prop_VPS8 Beta-prop_Nup120_160 WD40_RFWD3 PD40 PAC11 Beta-prop_NWD2_C WD_LRWD1 BCAS3_WD40 Beta-prop_IFT122_2nd AC_1 DUF6406
Other DBs
NCBI-GeneID: 4339488
NCBI-ProteinID: XP_015637863
UniProt: Q0DGA6 Q65XN0
LinkDB
Position
5:join(27081332..27081406,27081489..27081589,27082191..27082364,27082444..27082543,27082661..27082777,27082864..27083001,27083099..27083180,27083626..27083675,27083743..27083868)
AA seq 320 aa
MAATLSQLDDGIVRGMAIGAVFTDYAGKINCLDFHRKEDLLVTSSEDDSIRLYNITSATL
LKTTYHRKHGADRVCFTHHPSSILCSSRYNLESAESLRYLSLYDNRCLRYFKGHKDRVVS
LCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPSVAYDQQGLVFAVAMEGGAIK
LFDSRSYDKGPFDTFLVGGDTAEVSDIKFSNDGKSMLLTTTNNHIYVLDAYGGDKRCGFS
LESSPNVATEAAFTPDGQYVISGSGDGTLHAWNINTIQEIACWNSHIGPITALKWAPRRA
MFATASTALTFWIPNNSSSN
NT seq 963 nt   +upstreamnt  +downstreamnt
atggcggcgacgctgtcgcagctcgacgacgggatcgtccgcgggatggccatcggcgcg
gtattcaccgactacgctgggaagataaactgcctcgacttccaccgcaaggaggatctc
ctcgtcacctccagcgaggacgactccatacgcctctacaacatcaccagcgccacgttg
ttgaagactacatatcataggaaacatggtgctgaccgtgtctgtttcactcaccatccg
agttctatcttatgttcatcaagatacaatctagagtcagcagagtcacttcgttattta
tcactgtatgacaaccgttgcttaagatattttaaaggacacaaagacagggttgtttca
ctatgtatgtcacctgtcaacgatagttttatgtcaggatcacttgatcacagtgtcagg
atatgggatcttcgtgtaaatgcttgtcagggtatactacgtttgcgtggtaggccttct
gttgcatatgatcagcagggacttgtttttgccgtggcaatggaaggaggtgctattaag
ctatttgattcccggtcatatgacaaaggtccctttgacactttcttggttggtggagat
acagctgaagtttctgacatcaaatttagcaatgatggcaagtccatgcttttgacaaca
accaacaaccatatatatgttctggatgcatatggaggggataagaggtgtggctttagt
ctggagtcatctcccaatgtagcaactgaagctgcttttactccagatggccaatatgta
atttcaggatctggtgatggtaccttgcatgcttggaacatcaatacaatacaagagatt
gcttgttggaacagtcacatcggtcctatcactgctttgaagtgggctccccgtcgagca
atgtttgcaactgcgtcaactgccctaactttctggattcccaacaattccagttcgaat
tag

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