KEGG   Oryza sativa japonica (Japanese rice): 4339539
Entry
4339539           CDS       T01015                                 
Symbol
GPB-LR, OsJ_19467, RACK1B
Name
(RefSeq) small ribosomal subunit protein RACK1y
  KO
K14753  guanine nucleotide-binding protein subunit beta-2-like 1 protein
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03010  Ribosome
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09122 Translation
   03010 Ribosome
    4339539 (GPB-LR)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4339539 (GPB-LR)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:osa04147]
    4339539 (GPB-LR)
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     4339539 (GPB-LR)
Exosome [BR:osa04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   4339539 (GPB-LR)
  Exosomal proteins of colorectal cancer cells
   4339539 (GPB-LR)
  Exosomal proteins of bladder cancer cells
   4339539 (GPB-LR)
SSDB
Motif
Pfam: WD40 Beta-prop_IFT122_1st Beta-prop_WDR5 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_Prp19 WD40_Gbeta WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 EIF3I NBCH_WD40 WDR55 Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_2nd DSE1_N Beta-prop_SPT8 WDR90_beta-prop_4th Beta-prop_SCAP Beta-prop_WDR75_1st Beta-prop_EML Beta-prop_WDR90_POC16_2nd Beta-prop_VPS8 ANAPC4_WD40 TRM82_WD Beta-prop_TEP1_C ASA1 WD40_MABP1-WDR62_1st Beta-prop_WDR41 Beta-prop_Aladin Beta-prop_HPS5 Beta-prop_NOL10_N Beta-prop_DCAF12 CFAP251_N Beta-prop_NWD2_C Beta-prop_IFT140_1st Beta-prop_DCAF4 Beta-prop_EIPR1 Beta-prop_ACSF4 Beta-prop_WDR75_2nd Beta-prop_WDR19_1st eIF2A Tricorn_2nd PROPPIN Beta-prop_WDR35_TULP_N Cytochrom_D1 DUF7037 Beta-prop_pof12 CFAP43_N
Other DBs
NCBI-GeneID: 4339539
NCBI-ProteinID: NP_001389551
LinkDB
Position
5:complement(join(27624427..27624543,27625635..27626528))
AA seq 336 aa
MAGQESLTLAGVLRGHNDMVTAIAAPIDNSPFIVSSSRDKSLLVWDITNPSTAVATDPEA
APPEYGVSYRRLTGHSHFVQDVVLSSDGQFALSGSWDGELRLWDLATGRTTRRFVGHTKD
VLSVAFSVDNRQIVSAARDNTIKLWNTLGECKYTIGGDHGAGEGHTGWVSCVRFSPNPMA
PTIVSGSWDRSVKVWNLTNCKLRTKLEGHNGYVNAVAVSPDGSLCASGGKDGTTLLWDLT
EGKMLYKLDAGAIIHSLCFSPNRYWLCAATEDSVKIWDLESKLVMQDLKPEVQAFKSQML
YCTSLSWSADGSTLFAGYTDGTIRVWKVSGFGGYAI
NT seq 1011 nt   +upstreamnt  +downstreamnt
atggcgggccaggagtcgctcaccctggcgggcgtcctgcgcggccacaacgacatggtg
acggcgatcgcggcgccgattgacaactcgcccttcatcgtctcctcctcccgcgacaag
tcgctgctggtgtgggacatcaccaacccgtccaccgccgtggccacggatcccgaggcg
gccccgccggagtacggcgtctcgtaccgccgcctcaccggccactcccacttcgtccag
gacgtcgtcctcagctccgacggccagttcgcgctctcgggatcctgggacggcgagctc
cgcctctgggacctagccaccggccgcaccacccgccgcttcgtcggccacaccaaggac
gtcctctccgtcgccttctccgtcgacaaccgccagatcgtctccgcggcgcgcgacaac
accatcaagctctggaacaccctcggcgagtgcaagtacaccatcggcggcgaccatggc
gccggcgagggccacaccgggtgggtctcctgcgtcagattctcccccaaccccatggcc
cccaccatcgtctccggctcgtgggatcgcagcgtcaaggtctggaacctcacgaactgc
aagctgcgcaccaagctcgagggccacaacggctacgtcaacgccgtcgccgtgagccca
gacggctccttgtgtgcctccggtgggaaggacggaaccaccctgctctgggatctcacc
gaggggaagatgctgtacaagctcgacgccggcgccatcatccactccctctgcttctcg
cccaaccgctactggctctgcgccgcgacagaggactccgtcaagatctgggacctcgag
tccaagctcgtcatgcaggacctcaagccagaagtccaggccttcaagagccagatgctg
tactgcacaagtttgagctggagcgctgatggcagcaccctcttcgctggctacactgat
ggaactatcagggtttggaaggtctcagggtttggcggctatgcaatctag

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