KEGG   Oryza sativa japonica (Japanese rice): 4339621
Entry
4339621           CDS       T01015                                 
Symbol
OsC3H38, OsJ_19555, U2AF35B
Name
(RefSeq) splicing factor U2af small subunit B
  KO
K12836  splicing factor U2AF 35 kDa subunit
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    4339621 (OsC3H38)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:osa03041]
    4339621 (OsC3H38)
Spliceosome [BR:osa03041]
 Complex A
  U2 snRNP components
   U2 related factors
    4339621 (OsC3H38)
 Complex B
    4339621 (OsC3H38)
SSDB
Motif
Pfam: zf-CCCH RRM_1 zf_CCCH_4 Torus zf-CCCH_4 HATPase_c Keratin_2_head
Other DBs
NCBI-GeneID: 4339621
NCBI-ProteinID: NP_001407811
LinkDB
Position
5:28266461..28267375
AA seq 304 aa
MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTVSPTIVLANMYQRPDMITP
GVDAQGQPIDPEKMQEHFEDFYEDIYEELSKFGEVETLNVCDNLADHMIGNVYVQFREEE
QAVAAHNALQGRFYSGRPIIVEYSPVTDFREATCRQFEENSCNRGGYCNFMHVKQIGREL
RRKLYGGRSRRSHGRSRSPSPRHRRGNRDRDDFRRERDGYRGGGDGYRGGGGGGGGDGYR
GGDSYRGGGGGGRRGGGSRYDRYDDGGRRRHGSPPRRARSPVRESSEERRAKIEQWNRER
EEKP
NT seq 915 nt   +upstreamnt  +downstreamnt
atggcggagcatttggcttcaatatttgggactgagaaggatagggttaactgccccttt
tacttcaagattggggcttgccgtcatggggatcgttgctcccgtctgcacaacaggcca
actgtgtcgccgacaattgtgcttgctaacatgtatcagcgccctgatatgatcacacca
ggagtcgatgctcaaggccaacctattgatcctgaaaagatgcaggagcactttgaggat
ttctatgaggatatctatgaggagctgagcaagtttggtgaggttgagaccctcaatgtc
tgtgataaccttgctgaccacatgataggcaatgtgtatgtccagttcagggaggaagaa
caggcagtcgctgcgcataatgcccttcaaggtcgcttctactcagggcgcccaataatt
gttgagtattcccctgtgactgatttccgtgaggcgacctgtaggcagtttgaggagaac
agctgcaaccgtgggggctactgtaattttatgcatgtaaagcagattggcagggagctc
aggaggaagctttatggggggcgatccaggaggagccatgggagaagccgcagcccaagc
ccacgccacaggaggggcaatcgtgaccgtgatgatttccgccgtgaacgtgatggttat
cgtggtggtggtgatggttaccgtggcggcggcggtggcggtggtggtgacggttaccgc
ggcggtgatagttaccgtggtggtggtggtggtggacgcaggggtgggggcagcaggtat
gacaggtatgatgatggaggaaggcgcaggcatggcagccccccaaggcgtgcaaggagc
ccagtcagggaaagcagcgaggaacgcagggcgaagattgaacagtggaaccgtgaacgg
gaggaaaagccttga

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