Oryza sativa japonica (Japanese rice): 4339621
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Entry
4339621 CDS
T01015
Symbol
OsC3H38, OsJ_19555, U2AF35B
Name
(RefSeq) splicing factor U2af small subunit B
KO
K12836
splicing factor U2AF 35 kDa subunit
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
4339621 (OsC3H38)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
osa03041
]
4339621 (OsC3H38)
Spliceosome [BR:
osa03041
]
Complex A
U2 snRNP components
U2 related factors
4339621 (OsC3H38)
Complex B
4339621 (OsC3H38)
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Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
RRM_1
zf_CCCH_4
Torus
zf-CCCH_4
HATPase_c
Keratin_2_head
Motif
Other DBs
NCBI-GeneID:
4339621
NCBI-ProteinID:
NP_001407811
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All DBs
Position
5:28266461..28267375
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AA seq
304 aa
AA seq
DB search
MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTVSPTIVLANMYQRPDMITP
GVDAQGQPIDPEKMQEHFEDFYEDIYEELSKFGEVETLNVCDNLADHMIGNVYVQFREEE
QAVAAHNALQGRFYSGRPIIVEYSPVTDFREATCRQFEENSCNRGGYCNFMHVKQIGREL
RRKLYGGRSRRSHGRSRSPSPRHRRGNRDRDDFRRERDGYRGGGDGYRGGGGGGGGDGYR
GGDSYRGGGGGGRRGGGSRYDRYDDGGRRRHGSPPRRARSPVRESSEERRAKIEQWNRER
EEKP
NT seq
915 nt
NT seq
+upstream
nt +downstream
nt
atggcggagcatttggcttcaatatttgggactgagaaggatagggttaactgccccttt
tacttcaagattggggcttgccgtcatggggatcgttgctcccgtctgcacaacaggcca
actgtgtcgccgacaattgtgcttgctaacatgtatcagcgccctgatatgatcacacca
ggagtcgatgctcaaggccaacctattgatcctgaaaagatgcaggagcactttgaggat
ttctatgaggatatctatgaggagctgagcaagtttggtgaggttgagaccctcaatgtc
tgtgataaccttgctgaccacatgataggcaatgtgtatgtccagttcagggaggaagaa
caggcagtcgctgcgcataatgcccttcaaggtcgcttctactcagggcgcccaataatt
gttgagtattcccctgtgactgatttccgtgaggcgacctgtaggcagtttgaggagaac
agctgcaaccgtgggggctactgtaattttatgcatgtaaagcagattggcagggagctc
aggaggaagctttatggggggcgatccaggaggagccatgggagaagccgcagcccaagc
ccacgccacaggaggggcaatcgtgaccgtgatgatttccgccgtgaacgtgatggttat
cgtggtggtggtgatggttaccgtggcggcggcggtggcggtggtggtgacggttaccgc
ggcggtgatagttaccgtggtggtggtggtggtggacgcaggggtgggggcagcaggtat
gacaggtatgatgatggaggaaggcgcaggcatggcagccccccaaggcgtgcaaggagc
ccagtcagggaaagcagcgaggaacgcagggcgaagattgaacagtggaaccgtgaacgg
gaggaaaagccttga
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