Oryza sativa japonica (Japanese rice): 4339759
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Entry
4339759 CDS
T01015
Name
(RefSeq) RNA polymerase sigma factor SigE, chloroplastic/mitochondrial
KO
K03093
RNA polymerase sigma-I factor
Organism
osa
Oryza sativa japonica (Japanese rice)
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
osa03021
]
4339759
Transcription machinery [BR:
osa03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
4339759
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GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
GerE
Motif
Other DBs
NCBI-GeneID:
4339759
NCBI-ProteinID:
XP_015637716
UniProt:
Q84JN3
Q0DFJ6
LinkDB
All DBs
Position
5:join(29411382..29411753,29411858..29412145,29412247..29412393,29412479..29412715,29412801..29413064,29413149..29413343)
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AA seq
500 aa
AA seq
DB search
MASTVTTPSRPVSAGCHRRSPRRSAPVVLSLGGGPRRRTPSSTSCSALASPAKQGTAKLP
PPQPTASRTAAADAERERERTDYNEVAAALESIYKLSPAVVEEKDADEEDEKSKQTKRKR
KGRVGRSRNATVTVRSSRRRRRGQRMDLGKRVEMRRREEEEGGGGAGKVEDEERGFEEML
LREHAVSTDMGSLDWKRMKIPPVLTSAQSIRLFRIMQPMKAIMEMKENLENEVQSEPNDA
QLAEAMNMSVLQMRRHLEVGRAARNKLIKHNLRLVLYTINKYYPDMSNDERFDDICQAGA
NGLITAIDRFEPKRGFRISTYALFWIRHSIVRAITLSNFTRFPFAMESERQEIHRAREEL
AFELGRAPTEEEVMKKVGLSPARYRDVVRMTRPTYSLHARNRVTQEELINEVTDDDAIGV
DTSSHNTLLRLAIDDLLDSLKPKESVVIRQRFGLDGRGKRTLSEIAGNLNISREMVRKYE
LKALMKLKHPTRVEYLRRYM
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccactgtgacgacgccgagccggccggtatccgccgggtgccaccggcgctcg
ccgcggcggtcagcgcccgtcgtgctctccctcggcggcgggccgcggcggcgcacgccg
tcgtccaccagctgctcggcgctcgcgtcgccggcgaagcagggcacggccaagctccct
ccgccgcagccgacggcgtcgaggaccgcggcggccgacgcggagcgggagcgggagcgg
acggactacaacgaggtggccgccgcgctggagagcatctacaagctgagccccgccgtg
gtcgaggagaaggacgccgacgaggaggacgagaagagcaaacagaccaagcggaagaga
aaaggcagagtggggaggagccggaacgcgacggtgacggtgaggagcagccggaggagg
aggcggggacagaggatggacctggggaagagggtggagatgaggaggagggaggaagaa
gagggcggcggcggcgccggcaaggtggaagacgaggagcgggggttcgaggagatgctg
ctccgggagcacgccgtgtccaccgacatgggcagcctcgactggaagcggatgaagatc
cctcccgtgctcacctccgcccagagcatccgcctcttcaggatcatgcagcccatgaag
gcgatcatggaaatgaaggagaacctggagaacgaagtgcagagcgagccaaacgacgca
cagctcgccgaggccatgaacatgtccgttcttcagatgaggcgccatctcgaggtcggc
cgagctgccaggaacaagctcatcaagcataatctccggctggtgctgtacacgatcaac
aagtactacccggacatgtccaacgacgagaggttcgacgacatctgccaggcgggcgcc
aacggcttgatcacggcgatcgaccggttcgagcccaagcgcggcttccgcatctccacc
tacgccctcttctggatccgccactccatcgtccgcgccatcaccctctccaacttcacc
cgcttccccttcgccatggaatccgagaggcaggagatccacagggctcgggaggagctg
gcgttcgagctggggagggcgccgacggaggaggaggtgatgaagaaggtggggctgtct
ccggcgaggtaccgcgacgtggtgcggatgacgaggcccacctactccctccacgcgcgt
aacagggtcacccaggaggagctcatcaacgaggtcaccgacgacgacgccatcggcgtc
gacaccagcagccacaacaccctcctccgcctcgccatcgacgacctcctggattcgctg
aagcccaaggagagcgtggtgatccggcagaggttcgggctggacgggagggggaagcgg
acgctgagcgagatcgccggaaacctcaacatctcgagggagatggtgcgcaagtacgag
ctcaaggcgctcatgaagctcaagcaccccacgcgagtggaatacctgcgcagatacatg
tga
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