KEGG   Oryza sativa japonica (Japanese rice): 4339794
Entry
4339794           CDS       T01015                                 
Symbol
DBB1, OsJ_19757, OsUV-DDB, OsUV-DDB1, P0663C08.8
Name
(RefSeq) DNA damage-binding protein 1 isoform 1
  KO
K10610  DNA damage-binding protein 1
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03420  Nucleotide excision repair
osa04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    4339794 (DBB1)
  09124 Replication and repair
   03420 Nucleotide excision repair
    4339794 (DBB1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:osa04121]
    4339794 (DBB1)
   03400 DNA repair and recombination proteins [BR:osa03400]
    4339794 (DBB1)
Ubiquitin system [BR:osa04121]
 Ubiquitin ligases (E3)
  Multi subunit Ring-finger type E3
   Cul4 complex
    Adoptor protein
     4339794 (DBB1)
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      4339794 (DBB1)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      4339794 (DBB1)
SSDB
Motif
Pfam: MMS1_N CPSF_A
Other DBs
NCBI-GeneID: 4339794
NCBI-ProteinID: NP_001389582
LinkDB
Position
5:join(29698587..29698690,29699021..29699069,29699168..29699227,29699318..29699409,29699922..29699973,29700114..29700176,29700287..29700336,29700846..29700921,29701349..29701561,29701668..29701774,29701871..29701979,29702394..29702594,29702678..29702893,29703192..29703302,29703660..29703935,29704013..29704287,29704719..29705070,29705276..29705560,29705647..29706228)
AA seq 1090 aa
MSVWNYVVTAHKPTSVTHSCVGNFTGPNQLNLIVAKCTRIEIHLLTPQGLQPMIDVPIYG
RIATLELFRPHNETQDFLFIATERYKFCVLQWDGEKSELLTRAMGDVSDRIGRPTDNGQI
GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCVKPTIVVL
YQDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGAGLLIPVPAPLGGVIIIGEETIVYC
NANSTFRAIPIKQSIIRAYGRVDPDGSRYLLGDNAGILHLLVLTHERERVTGLKIEYLGE
TSIASSISYLDNGVVYVGSRFGDSQLVKLNLQADPNGSYVEVLERYVNLGPIVDFCVVDL
DRQGQGQVVTCSGAFKDGSLRVVRNGIGINEQASVELQGIKGLWSLKSSFNDPYDMYLVV
SFISETRFLAMNMEDELEETEIEGFDAQTQTLFCQNAINDLLIQVTANSVRLVSCTSREL
VDQWNAPEGFSVNVASANASQVLLATGGGHLVYLEIKDSKLVEVKHIQLEHEISCVDLNP
IGENPQYSSLAAVGMWTDISVRILSLPDLELIRKENLGGEIVPRSVLLCTLEGVSYLLCA
LGDGHLFSFLLNASTGELTDRKKVSLGTQPISLRTFSSKGTTHVFASSDRPTVIYSSNKK
LLYSNVNLKEVNHMCPFNTAAIPDSLAIAKEGELSIGTIDDIQKLHIRTIPLNEQARRIC
HQEQSRTLAFCSFKHNQTSIEESETHFVRLLDHQTFEFLSIYQLDQYEHGCSIISCSFSD
DNNVYYCVGTAYVLPEENEPSKGRILVFAVEDGRLQLIVEKETKGAVYSLNAFNGKLLAA
INQKIQLYKWMLREDGSHELQSECGHHGHILALYTQTRGDFIVVGDLMKSISLLVYKHEE
SAIEELARDYNANWMSAVEMLDDEIYIGAENNYNIFTVRKNSDAATDEERGRLEVVGEYH
LGEFVNRLRHGSLVMRLPDSEMGQIPTVIFGTINGVIGIIASLPHEQYVFLEKLQSTLVK
FIKGVGNLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLSRNKMEEVAKGMGVPVEELS
KRVEELTRLH
NT seq 3273 nt   +upstreamnt  +downstreamnt
atgagcgtgtggaactacgtcgtgacggcgcacaagcccaccagcgtcacccactcctgc
gtcggcaacttcaccggccccaaccagctcaacctcatcgtcgcgaaatgcacccgtatc
gagatccacttgcttactcctcaaggcctccagcctatgattgatgtacctatctatgga
agaatcgccacactagagctcttccgccctcataatgagactcaggacttccttttcatt
gcgactgaaagatacaaattctgtgttctgcagtgggatggagaaaaatcggagcttctc
actagagcgatgggagatgtttctgatcgcattggtcgccctacggacaatggacagatt
gggatcatcgaccctgactgtagacttattggtcttcacctctacgatggattatttaag
gttataccgtttgataacaaagggcagctgaaggaagctttcaatatcaggcttgaagaa
cttcaagtattggacatcaagttcctgtatggctgtgttaaacctactatagttgtcctc
taccaggataacaaagatgcaagacatgttaagacatatgaagttgcattgaaggacaaa
gactttgttgagggtccttggtcgcagaacaatttagacaatggtgctggtctgttaata
cctgtaccagctcctcttggtggtgtcataattattggtgaggagacaatagtttactgc
aatgccaactctacatttagagctataccaatcaaacagtcaatcataagagcttacgga
cgggttgacccagacggttcgcgctatttacttggtgataatgcaggcatattgcattta
cttgtccttacccatgaacgagagagggtaaccggtctgaaaatcgagtacttgggagag
acttcaattgcatcatcaatatcatatctcgataatggtgttgtctacgttggttctcga
tttggtgattcacagcttgtaaaactaaatctccaagctgacccaaatggttcatatgtt
gaagttcttgagcgatatgtgaaccttggacccatcgtggacttctgtgtggttgacctt
gacaggcagggtcagggtcaggttgtcacttgttcaggagcatttaaagatggttccctt
cgggtggttcggaatgggataggtatcaatgagcaggcttcagtagaactacaagggatc
aagggtttatggtcgttgaaatcttccttcaatgatccgtatgacatgtacctagttgtg
agctttataagcgagacaagattcttggctatgaacatggaagatgagttagaagaaact
gagatagaaggctttgatgcgcagactcagactttgttttgtcaaaatgccatcaatgat
ctgcttatacaggttactgctaattctgttcgtctggttagttgtacctctcgggagcta
gtggatcaatggaatgcaccagaaggattttcagtcaatgttgcatcagctaatgccagt
caggttctgctggcaacaggtggtggccatcttgtttacctcgaaattaaggattctaag
ctggttgaagtgaaacatatacagttagaacatgagatctcctgtgttgatttgaatcca
attggggagaatccacagtatagctctctggctgctgttgggatgtggactgatataagt
gttagaatactttcacttccagaccttgaattaatcaggaaggagaacttaggtggagaa
attgttcctcggtctgttctgctttgtaccttggaaggggtttcatatttgctctgtgct
cttggagatggtcatctgttcagttttctgttgaatgcaagtacgggtgaattaactgat
agaaagaaggtttctcttggtacccaaccgataagccttcgtacattctcatcaaagggt
acaacccacgtgtttgcttcatcggatagaccgactgttatttatagcagcaacaagaag
ttgctgtatagcaatgtcaatttgaaggaagtcaaccatatgtgtccttttaatacagct
gctattcctgacagccttgcaattgctaaagaaggtgaactctcaattggaaccatcgat
gacatccagaagcttcatatccgtacaatccccttgaatgaacaagcacgtcgcatttgc
catcaggaacagtccaggacactagcgttctgcagcttcaagcacaaccagactagtata
gaggaaagcgagacacattttgttcgtcttttggatcatcaaacttttgagttcctgtca
atttatcagcttgatcaatatgagcatggctgctccatcattagctgctcattctcagat
gataataatgtttattattgtgtgggaacagcatatgttttaccagaggaaaatgaacca
tcaaagggccggatccttgtatttgcagttgaagatggcagactgcaattaattgtagag
aaagaaactaaaggagctgtctattcgctgaatgcattcaacggaaaattgttggcagct
atcaaccagaagattcaactatataagtggatgctacgggaggacggttcacatgagctg
cagtctgagtgtgggcatcatgggcacatattggctttgtacactcagactcgtggcgat
ttcattgtagttggagacttgatgaaatcaatatccttgctcgtgtacaagcacgaggaa
agtgcgattgaagagcttgctagggattacaatgcaaactggatgagtgcagttgagatg
cttgatgacgagatctatattggagcagagaataactacaacattttcactgtgcggaag
aacagtgatgcagcgacagatgaagagaggggcaggctggaggttgttggagagtaccat
cttggagagtttgtgaatagactccggcatggttcgctggtaatgcggcttccggactca
gagatgggccagatcccgacggttatctttggcaccatcaacggggttattgggattatt
gcttcgcttccacatgagcagtatgtatttcttgagaagctccagtcgactctggtgaag
ttcataaagggcgtggggaacctgagccatgagcaatggcggtcgttccacaacgacaag
aagacgtcggaggcccgcaatttcctggatggtgacctgatcgagtcattccttgatcta
agcagaaacaagatggaggaggtggccaagggtatgggggtccccgttgaggagctatcc
aagagggtggaggagctgactagattgcactag

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