Oryza sativa japonica (Japanese rice) (RefSeq): 4339794
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Entry
4339794 CDS
T01015
Name
(RefSeq) DNA damage-binding protein 1a isoform X1
KO
K10610
DNA damage-binding protein 1
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03420
Nucleotide excision repair
osa04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
4339794
09124 Replication and repair
03420 Nucleotide excision repair
4339794
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
osa04121
]
4339794
03400 DNA repair and recombination proteins [BR:
osa03400
]
4339794
Ubiquitin system [BR:
osa04121
]
Ubiquitin ligases (E3)
Multi subunit Ring-finger type E3
Cul4 complex
Adoptor protein
4339794
DNA repair and recombination proteins [BR:
osa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
4339794
TCR (transcription coupled repair) factors
Cul4-CSA complex
4339794
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MMS1_N
CPSF_A
Motif
Other DBs
NCBI-GeneID:
4339794
NCBI-ProteinID:
XP_015639287
UniProt:
Q6L4S0
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All DBs
Position
5:29511860..29520023
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AA seq
1090 aa
AA seq
DB search
MSVWNYVVTAHKPTSVTHSCVGNFTGPNQLNLIVAKCTRIEIHLLTPQGLQPMIDVPIYG
RIATLELFRPHNETQDFLFIATERYKFCVLQWDGEKSELLTRAMGDVSDRIGRPTDNGQI
GIIDPDCRLIGLHLYDGLFKVIPFDNKGQLKEAFNIRLEELQVLDIKFLYGCVKPTIVVL
YQDNKDARHVKTYEVALKDKDFVEGPWSQNNLDNGAGLLIPVPAPLGGVIIIGEETIVYC
NANSTFRAIPIKQSIIRAYGRVDPDGSRYLLGDNAGILHLLVLTHERERVTGLKIEYLGE
TSIASSISYLDNGVVYVGSRFGDSQLVKLNLQADPNGSYVEVLERYVNLGPIVDFCVVDL
DRQGQGQVVTCSGAFKDGSLRVVRNGIGINEQASVELQGIKGLWSLKSSFNDPYDMYLVV
SFISETRFLAMNMEDELEETEIEGFDAQTQTLFCQNAINDLLIQVTANSVRLVSCTSREL
VDQWNAPEGFSVNVASANASQVLLATGGGHLVYLEIKDSKLVEVKHIQLEHEISCVDLNP
IGENPQYSSLAAVGMWTDISVRILSLPDLELIRKENLGGEIVPRSVLLCTLEGVSYLLCA
LGDGHLFSFLLNASTGELTDRKKVSLGTQPISLRTFSSKGTTHVFASSDRPTVIYSSNKK
LLYSNVNLKEVNHMCPFNTAAIPDSLAIAKEGELSIGTIDDIQKLHIRTIPLNEQARRIC
HQEQSRTLAFCSFKHNQTSIEESETHFVRLLDHQTFEFLSIYQLDQYEHGCSIISCSFSD
DNNVYYCVGTAYVLPEENEPSKGRILVFAVEDGRLQLIVEKETKGAVYSLNAFNGKLLAA
INQKIQLYKWMLREDGSHELQSECGHHGHILALYTQTRGDFIVVGDLMKSISLLVYKHEE
SAIEELARDYNANWMSAVEMLDDEIYIGAENNYNIFTVRKNSDAATDEERGRLEVVGEYH
LGEFVNRLRHGSLVMRLPDSEMGQIPTVIFGTINGVIGIIASLPHEQYVFLEKLQSTLVK
FIKGVGNLSHEQWRSFHNDKKTSEARNFLDGDLIESFLDLSRNKMEEVAKGMGVPVEELS
KRVEELTRLH
NT seq
3273 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtgtggaactacgtcgtgacggcgcacaagcccaccagcgtcacccactcctgc
gtcggcaacttcaccggccccaaccagctcaacctcatcgtcgcgaaatgcacccgtatc
gagatccacttgcttactcctcaaggcctccagcctatgattgatgtacctatctatgga
agaatcgccacactagagctcttccgccctcataatgagactcaggacttccttttcatt
gcgactgaaagatacaaattctgtgttctgcagtgggatggagaaaaatcggagcttctc
actagagcgatgggagatgtttctgatcgcattggtcgccctacggacaatggacagatt
gggatcatcgaccctgactgtagacttattggtcttcacctctacgatggattatttaag
gttataccgtttgataacaaagggcagctgaaggaagctttcaatatcaggcttgaagaa
cttcaagtattggacatcaagttcctgtatggctgtgttaaacctactatagttgtcctc
taccaggataacaaagatgcaagacatgttaagacatatgaagttgcattgaaggacaaa
gactttgttgagggtccttggtcgcagaacaatttagacaatggtgctggtctgttaata
cctgtaccagctcctcttggtggtgtcataattattggtgaggagacaatagtttactgc
aatgccaactctacatttagagctataccaatcaaacagtcaatcataagagcttacgga
cgggttgacccagacggttcgcgctatttacttggtgataatgcaggcatattgcattta
cttgtccttacccatgaacgagagagggtaaccggtctgaaaatcgagtacttgggagag
acttcaattgcatcatcaatatcatatctcgataatggtgttgtctacgttggttctcga
tttggtgattcacagcttgtaaaactaaatctccaagctgacccaaatggttcatatgtt
gaagttcttgagcgatatgtgaaccttggacccatcgtggacttctgtgtggttgacctt
gacaggcagggtcagggtcaggttgtcacttgttcaggagcatttaaagatggttccctt
cgggtggttcggaatgggataggtatcaatgagcaggcttcagtagaactacaagggatc
aagggtttatggtcgttgaaatcttccttcaatgatccgtatgacatgtacctagttgtg
agctttataagcgagacaagattcttggctatgaacatggaagatgagttagaagaaact
gagatagaaggctttgatgcgcagactcagactttgttttgtcaaaatgccatcaatgat
ctgcttatacaggttactgctaattctgttcgtctggttagttgtacctctcgggagcta
gtggatcaatggaatgcaccagaaggattttcagtcaatgttgcatcagctaatgccagt
caggttctgctggcaacaggtggtggccatcttgtttacctcgaaattaaggattctaag
ctggttgaagtgaaacatatacagttagaacatgagatctcctgtgttgatttgaatcca
attggggagaatccacagtatagctctctggctgctgttgggatgtggactgatataagt
gttagaatactttcacttccagaccttgaattaatcaggaaggagaacttaggtggagaa
attgttcctcggtctgttctgctttgtaccttggaaggggtttcatatttgctctgtgct
cttggagatggtcatctgttcagttttctgttgaatgcaagtacgggtgaattaactgat
agaaagaaggtttctcttggtacccaaccgataagccttcgtacattctcatcaaagggt
acaacccacgtgtttgcttcatcggatagaccgactgttatttatagcagcaacaagaag
ttgctgtatagcaatgtcaatttgaaggaagtcaaccatatgtgtccttttaatacagct
gctattcctgacagccttgcaattgctaaagaaggtgaactctcaattggaaccatcgat
gacatccagaagcttcatatccgtacaatccccttgaatgaacaagcacgtcgcatttgc
catcaggaacagtccaggacactagcgttctgcagcttcaagcacaaccagactagtata
gaggaaagcgagacacattttgttcgtcttttggatcatcaaacttttgagttcctgtca
atttatcagcttgatcaatatgagcatggctgctccatcattagctgctcattctcagat
gataataatgtttattattgtgtgggaacagcatatgttttaccagaggaaaatgaacca
tcaaagggccggatccttgtatttgcagttgaagatggcagactgcaattaattgtagag
aaagaaactaaaggagctgtctattcgctgaatgcattcaacggaaaattgttggcagct
atcaaccagaagattcaactatataagtggatgctacgggaggacggttcacatgagctg
cagtctgagtgtgggcatcatgggcacatattggctttgtacactcagactcgtggcgat
ttcattgtagttggagacttgatgaaatcaatatccttgctcgtgtacaagcacgaggaa
agtgcgattgaagagcttgctagggattacaatgcaaactggatgagtgcagttgagatg
cttgatgacgagatctatattggagcagagaataactacaacattttcactgtgcggaag
aacagtgatgcagcgacagatgaagagaggggcaggctggaggttgttggagagtaccat
cttggagagtttgtgaatagactccggcatggttcgctggtaatgcggcttccggactca
gagatgggccagatcccgacggttatctttggcaccatcaacggggttattgggattatt
gcttcgcttccacatgagcagtatgtatttcttgagaagctccagtcgactctggtgaag
ttcataaagggcgtggggaacctgagccatgagcaatggcggtcgttccacaacgacaag
aagacgtcggaggcccgcaatttcctggatggtgacctgatcgagtcattccttgatcta
agcagaaacaagatggaggaggtggccaagggtatgggggtccccgttgaggagctatcc
aagagggtggaggagctgactagattgcactag
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integrated database retrieval system
