KEGG   Oryza sativa japonica (Japanese rice) (RefSeq): 4339810
Entry
4339810           CDS       T01015                                 
Name
(RefSeq) sm-like protein LSM8
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
osa  Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03018  RNA degradation
osa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    4339810
  09123 Folding, sorting and degradation
   03018 RNA degradation
    4339810
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4339810
   03041 Spliceosome [BR:osa03041]
    4339810
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     4339810
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     4339810
Spliceosome [BR:osa03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    4339810
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 4339810
NCBI-ProteinID: XP_015640148
UniProt: A0A0P0WRT3 Q5TKF9
LinkDB
Position
5:29623057..29625065
AA seq 99 aa
MASAGPGLESLVDQIISVITNDGRNIVGTLRGFDQATNIILDESHERVYSTREGVQQLVL
GLYIIRGDNISVVGEVDEELDARLDLSNLRAHPLKPVIH
NT seq 300 nt   +upstreamnt  +downstreamnt
atggcgtccgccggcccggggctcgaatcgctcgtcgaccagatcatatccgtcatcaca
aacgatggccgcaacattgtggggacactcagaggattcgatcaagccaccaacatcatc
ctcgatgagtcccatgagagggtctattctaccagggagggagtgcaacagcttgttctt
gggttgtacatcataaggggcgacaacatcagcgtggtgggggaggtggatgaagaactg
gatgcgaggctggatctatcgaatctgagagcgcacccgctgaagcccgtgatccactaa

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