Oryza sativa japonica (Japanese rice): 4339810
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Entry
4339810 CDS
T01015
Name
(RefSeq) sm-like protein LSM8
KO
K12627
U6 snRNA-associated Sm-like protein LSm8
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03018
RNA degradation
osa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
4339810
09123 Folding, sorting and degradation
03018 RNA degradation
4339810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4339810
03041 Spliceosome [BR:
osa03041
]
4339810
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
4339810
mRNA degradation factors
5'-3' decay
Lsm complex
4339810
Spliceosome [BR:
osa03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
4339810
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
4339810
NCBI-ProteinID:
XP_015640148
UniProt:
A0A0P0WRT3
Q5TKF9
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All DBs
Position
5:join(29809771..29809810,29809916..29809956,29810050..29810124,29811099..29811151,29811289..29811379)
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AA seq
99 aa
AA seq
DB search
MASAGPGLESLVDQIISVITNDGRNIVGTLRGFDQATNIILDESHERVYSTREGVQQLVL
GLYIIRGDNISVVGEVDEELDARLDLSNLRAHPLKPVIH
NT seq
300 nt
NT seq
+upstream
nt +downstream
nt
atggcgtccgccggcccggggctcgaatcgctcgtcgaccagatcatatccgtcatcaca
aacgatggccgcaacattgtggggacactcagaggattcgatcaagccaccaacatcatc
ctcgatgagtcccatgagagggtctattctaccagggagggagtgcaacagcttgttctt
gggttgtacatcataaggggcgacaacatcagcgtggtgggggaggtggatgaagaactg
gatgcgaggctggatctatcgaatctgagagcgcacccgctgaagcccgtgatccactaa
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