Oryza sativa japonica (Japanese rice): 4339839
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Entry
4339839 CDS
T01015
Symbol
OsPUB12, PUB12
Name
(RefSeq) U-box domain-containing protein 12
KO
K27628
U-box domain-containing protein 12/13/14 [EC:
2.3.2.27
]
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
4339839 (OsPUB12)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
osa04121
]
4339839 (OsPUB12)
Enzymes [BR:
osa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
4339839 (OsPUB12)
Ubiquitin system [BR:
osa04121
]
Ubiquitin ligases (E3)
U-box type E3
4339839 (OsPUB12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Arm
U-box
ARM_ARMC5
HEAT_2
HEAT_EZ
zf-RING_UBOX
zf-C3HC4_4
Cnd1
Arm_2
zf-Nse
ARMC9_ARM
ARM_LIN_C
zf-C3HC4_2
Neurochondrin
zf-C3HC4
zf-RING_2
zf-rbx1
KAP
Motif
Other DBs
NCBI-GeneID:
4339839
NCBI-ProteinID:
NP_001389605
LinkDB
All DBs
Position
6:join(341772..341993,342089..342205,342292..342705,342795..343856)
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AA seq
604 aa
AA seq
DB search
MPKRVADEIAALPEPRGPLRRPCADLSRRVRLLAPLLDHLPASSSSSSSTPLADALGAAR
DLLRKTRDGSKIDQAMRGDAFLDEFAGVNRQIHLALDALPYNTFHMPQEVQEQVALVHSQ
FQRASTRTDPPDTQLSMDLAWALTDNPSDPALLTRISHKLQLHTMADMKNESIALHNMVI
STAGEPDGCVDQMSSLLKKLKDCVVTEDHANDALTTRSASIKHRSPIIPDEFRCPISLEL
MQDPVIVSSGQTYERSCIQKWLDSGHKTCPKTQQPLSHTSLTPNFVLKSLISQWCEANGI
ELPKNKQNSRDKKAAKSSDYDHAGLVSLMNRLRSGNQDEQRAAAGEIRLLAKRNVNNRIC
IAEAGAIPLLVNLLSSSDPRTQEHAVTALLNLSIHENNKASIVDSHAIPKIVEVLKTGSM
ETRENAAATLFSLSVVDENKVTIGAAGAIPPLINLLCDGSPRGKKDAATAIFNLCIYQGN
KVRAVKAGIVIHLMNFLVDPTGGMIDEALSLLSILAGNPEGKIVIARSEPIPPLVEVIKT
GSPRNRENAAAILWLLCSADTEQTLAAKAAGVEDALKELSETGTDRAKRKASSILELMHQ
ANEA
NT seq
1815 nt
NT seq
+upstream
nt +downstream
nt
atgccgaagcgggtggccgacgagatcgcggcgctcccggagccgcgtgggcccctgcgc
cgcccctgcgccgacctctcccgccgcgtccgcctcctcgccccgctgctcgaccacctc
cccgcctcctcctcctcctcctcgagtactcccctcgccgacgccctcggggccgcgcga
gacctcctccgcaagacccgcgacggcagtaagatcgaccaggccatgcgaggggatgcg
ttcctggacgaatttgcaggcgtcaacaggcagattcacctcgccttggatgccttgccc
tacaacaccttccacatgccccaagaggtccaagagcaggtcgcgctcgtccactcccag
ttccaacgagcctccacaaggacggatcccccggatacacagctttccatggatcttgct
tgggctcttaccgacaacccttccgaccccgcccttctcaccaggatctctcacaagctg
cagctgcacaccatggctgacatgaagaacgagtccatcgcccttcataacatggtcatt
tccactgccggagaacctgatggctgtgtcgaccaaatgtcttccctgctcaagaagctc
aaagactgcgtcgtcactgaagatcatgccaacgatgccctcaccactaggtctgcctcc
attaagcataggtctcctatcatcccagacgagtttaggtgccccatatccctcgagctc
atgcaggaccctgtcattgtgtccagcggccagacatatgagcgatcctgcatccaaaag
tggcttgattctggccacaagacctgccctaagacgcagcagccactctcgcatacttct
ctcaccccaaactttgtcctcaaaagcctcatctcacaatggtgcgaagctaatggtatt
gagcttcccaagaacaaacagaattcccgtgataagaaggcggcaaaaagttccgactat
gaccatgctggtctagtctcgctgatgaacaggctcaggagtgggaaccaagatgagcag
cgggcagctgcaggtgagatacgactgcttgccaagagaaatgtcaacaaccggatatgc
atcgctgaggcaggagccatccccttgctggtcaatctgctctcctcttcagatccacga
acacaggaacatgcagtgacagcactcctgaacctctccattcatgagaacaacaaggca
agcatcgtggactctcatgctatccctaagatagtggaagtgctgaaaactgggagcatg
gaaaccagagagaatgcagcagccacactattcagcttatcagttgttgatgagaacaag
gtaactattggcgccgctggtgcaatccctccactcatcaaccttctgtgcgatgggagc
ccaagaggcaagaaagatgctgcgacggcaatttttaacctgtgcatatatcagggaaac
aaggtccgggcagtgaaagctggaatcgtcatccatctgatgaacttcttggtggatcct
acagggggaatgattgacgaggcacttagtcttctgtcaattcttgcaggcaacccagaa
ggcaagattgtaattgcgcggtcagaaccaattcctccacttgttgaggttatcaaaaca
gggtctcctcgcaatagggagaacgctgcagccattctatggttgctctgttctgctgat
actgagcagacattggctgcaaaggcagctggagtggaggatgcactcaaggagctgtca
gaaactggaacagatcgtgcaaagaggaaagcttctagcatcctcgaactcatgcaccaa
gcaaatgaggcatga
DBGET
integrated database retrieval system
