Oryza sativa japonica (Japanese rice): 4339910
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Entry
4339910 CDS
T01015
Name
(RefSeq) ruBisCO large subunit-binding protein subunit beta, chloroplastic
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
4339910
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4339910
03110 Chaperones and folding catalysts [BR:
osa03110
]
4339910
03029 Mitochondrial biogenesis [BR:
osa03029
]
4339910
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
osa04147
]
4339910
Enzymes [BR:
osa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
4339910
Messenger RNA biogenesis [BR:
osa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
4339910
Chaperones and folding catalysts [BR:
osa03110
]
Heat shock proteins
HSP60 / Chaperonin
4339910
Mitochondrial biogenesis [BR:
osa03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
4339910
Exosome [BR:
osa04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
4339910
Exosomal proteins of other body fluids (saliva and urine)
4339910
Exosomal proteins of breast cancer cells
4339910
Exosomal proteins of colorectal cancer cells
4339910
Exosomal proteins of bladder cancer cells
4339910
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-GeneID:
4339910
NCBI-ProteinID:
XP_015642765
UniProt:
Q9LWT6
Q0DF58
LinkDB
All DBs
Position
6:complement(join(967636..967649,967751..967874,968327..968419,968497..968589,968763..968867,969014..969085,969210..969287,969563..969732,969860..970094,970185..970427,970596..970691,970798..970935,971367..971492,971588..971806))
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AA seq
601 aa
AA seq
DB search
MASTFGATSTVGLMAAPTGIVSDKKPSSLSSVSSVSVASRPRNARLQRKCNFRVKAAKEL
YFNKDGSAIKKLQTGVNKLADLVGVTLGPKGRNVVLESKYGSPRIVNDGVTVAREVELED
PVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTA
KALVEELKKLSKEVEDSELADVAAVSAGNNYEIGNMIAEAMSKVGRKGVVTLEEGRSSEN
NLYVVEGMQFERGYISPYFVTDSEKMSAEYENCKLLLVDKKITNARDLINVLEEAIRGAY
PILIIAEDIEQEALATLVVNKLRGSLKIAAIKAPGFGERKTQYLDDIAILTGATVIRDEV
GLSLDKADKSVLGTAAKVVLNKESTTIVGDGSTQEEVTKRVAQIKNLIEAAEQEYEKEKL
NERIAKLAGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTLLRLAAR
VDAIKDNLENDEQKVGAEIVRRALSYPLKLIAKNAGVNGSVVTEKVLSNDNFKFGYNAAT
GQYEDLMAAGIIDPTKVVRCCLEHAASVAKTFLTSDVVVVEIKEPEPAPVTNPMDNSGYG
Y
NT seq
1806 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaacattcggtgccacttctacggttggcctcatggctgcgccaaccggaatt
gtatcagacaagaagccatcttctctatcttcggtgtcatctgtttctgttgccagccga
ccacgcaatgcacgccttcagaggaagtgcaacttcagggtaaaagctgccaaggagttg
tacttcaacaaggatggctcggctatcaagaagcttcagactggagtaaacaagcttgct
gaccttgttggagttacactgggaccaaagggaaggaatgttgttttggagagcaagtat
gggtcccctaggattgtcaatgatggtgttacagttgcaagagaggttgaactggaggat
cctgttgaaaatattggagctaagttggttaggcaagcagcagcaaagaccaatgattta
gctggagatggcacaactacttctgttgtgcttgctcaggggctgattgctgagggtgtt
aaggtcgttgcagctggtgccaatcctgtgcaaattacacgtggtatcgagaaaactgcg
aaagcactagttgaagagctaaagaaattgtcaaaggaggttgaagacagtgagcttgcg
gatgttgctgcagtcagtgctggcaacaattatgaaatcggtaatatgatagcagaggct
atgagcaaggttggcaggaagggtgtggttacccttgaagaagggagaagttctgagaat
aatctctatgttgtggagggaatgcagtttgaacgtggttatatctccccgtattttgta
actgacagcgagaaaatgtctgcagaatatgagaactgcaagcttcttttggtggacaaa
aaaatcaccaacgcaagggatcttatcaatgttttggaggaggccataagaggtgcatac
ccaattctgataattgctgaggatattgagcaggaggctcttgctactcttgttgtcaac
aagcttagagggtcattgaaaattgccgctatcaaagcccctggttttggtgagcgcaag
acccagtacttggatgatattgccattctaactggagcaactgtaatcagggatgaagtt
gggctgtcacttgacaaggcagacaaatcagttttaggaacggctgcaaaggtggtcctt
aacaaagagtcaacaacaattgttggtgatggcagtacacaggaagaagtgactaagagg
gttgcacaaataaaaaatctcatcgaggctgccgaacaagaatacgagaaggaaaagctc
aatgagaggattgcaaagcttgctggtggtgttgcagtcattcaggtgggagcacaaaca
gagaccgaactaaaagagaagaagttgagagttgaggatgccctaaatgctaccaaggct
gctgttgaggaaggtattgttgttggtggagggtgcactcttctgagactggcagctaga
gttgacgccatcaaggacaacctggagaatgatgagcagaaggttggagctgaaattgta
aggagagcgctgagctacccgcttaaattgattgctaagaatgctggtgttaatggaagc
gttgttaccgagaaggttctctctaacgataacttcaagtttggttacaatgctgcaact
ggacagtacgaggatttgatggctgctggtatcattgaccccactaaggtggtgagatgt
tgtcttgagcatgctgcgtcggtggccaagacattcctcacatcggatgtcgtcgtcgtc
gagatcaaggagcctgagcctgcgcccgtcaccaacccgatggacaactccggctacggg
tactga
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