Oryza sativa japonica (Japanese rice): 4339929
Help
Entry
4339929 CDS
T01015
Name
(RefSeq) syntaxin-43
KO
K08489
syntaxin 16
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa04130
SNARE interactions in vesicular transport
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04130 SNARE interactions in vesicular transport
4339929
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
osa04131
]
4339929
Membrane trafficking [BR:
osa04131
]
SNARE
Syntaxin (Qa)
Stx-TGN / EE
4339929
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNARE
Syntaxin_2
GCP_C_terminal
MCPsignal
K_channel_TID
EF-G-binding_N
Prominin
EFL1
Motif
Other DBs
NCBI-GeneID:
4339929
NCBI-ProteinID:
XP_015641289
UniProt:
Q5VRL4
B9FR77
LinkDB
All DBs
Position
6:complement(join(1059409..1059516,1060200..1060280,1060372..1060437,1060560..1060637,1062061..1062144,1062234..1062323,1062422..1062698,1063118..1063326))
Genome browser
AA seq
330 aa
AA seq
DB search
MATRNRTPLYRKYRDALRHVRAPAGAPSSSSSGGGGGGGGGGPVIEMASLLRSNRPYAPL
STDDPSAASSRSAVTVGLPPAWVDVSEEISANMQRARTKMAELAKAHAKALMPSFGDGRD
DQRAIEILTHEVTDLLKRSEKRLQKLSMKDSSEDSNVRKNVQRSLATDLQSLSMEFRKKQ
STYLKQLRQQKEGQDGVDLEMNMNGSKSTFELGDDEFEDVGFTEVQMSKLKKSEAFTRER
EREIEQVVESVNELAQIMKDLSVLVIDQGTIIDRIDYNIQNVAASVEEGYKQLQKAERTQ
KKGGMVMCATTLVILIFIMIVLLILKKILF
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgcggaaccggacgcctctgtaccgcaagtaccgcgacgcgctgcgccacgtc
cgcgcgccggcgggggctccgtcgtcgtcatcgtccggaggaggaggaggaggaggaggc
ggggggccggtgatcgagatggcctcgctgctgcgctccaaccgcccctacgcccccctc
agcaccgacgacccctccgccgcctccagtagaagtgctgtgacggtcgggctgcccccg
gcatgggttgatgtttccgaagagatatctgccaacatgcagcgggcaagaacgaagatg
gcagagctggctaaggcacatgccaaagccttgatgccatcctttggtgatggtagagat
gaccagcgagcaattgagattcttacacatgaggtaacagacttactgaagaggtcggag
aagagacttcagaagctatccatgaaagattcttcagaggattcaaatgtccgaaagaat
gtccagcgttcactcgctacagacctgcaaagcctttcgatggagttccgtaaaaaacag
tcaacttatttaaagcagctacgccaacagaaagaggggcaagatggagttgatttggaa
atgaacatgaatggttctaagtcgacatttgaacttggagatgatgaatttgaggatgtg
ggtttcacggaggttcagatgtcaaaacttaagaaaagcgaagcattcaccagagaaaga
gaaagagaaatcgagcaggttgtcgaatcagttaacgagcttgcacagatcatgaaggac
ctttcagttcttgtgatagatcagggaactatcatagatcggatagactacaatatacag
aatgttgcagcttccgttgaagagggttataaacaattgcaaaaggctgagaggacacag
aagaaagggggcatggtcatgtgtgcgactacccttgtcattcttatcttcatcatgata
gtcctcctgattttaaagaagatccttttctga
DBGET
integrated database retrieval system
