KEGG   Oryza sativa japonica (Japanese rice): 4340097
Entry
4340097           CDS       T01015                                 
Name
(RefSeq) coatomer subunit beta'-1 isoform 2
  KO
K17302  coatomer subunit beta'
Organism
osa  Oryza sativa japonica (Japanese rice)
Brite
KEGG Orthology (KO) [BR:osa00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:osa04131]
    4340097
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:osa04147]
    4340097
Membrane trafficking [BR:osa04131]
 Endoplasmic reticulum (ER) - Golgi transport
  Retrieval pathways
   Coat protein complex I (COP-I)
    4340097
Exosome [BR:osa04147]
 Exosomal proteins
  Exosomal proteins of colorectal cancer cells
   4340097
SSDB
Motif
Pfam: B-prop_COPA_B_2nd TPR_COPA_B Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 Beta-prop_IFT122_1st WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz WDR55 Beta-prop_WDR3_2nd WD40_Gbeta Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR75_1st EIF3I Beta-prop_EML Beta-prop_TEP1_2nd Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR36-Utp21_1st Beta-prop_EIPR1 Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_C WD40_MABP1-WDR62_1st DSE1_N Beta-prop_WDR41 ASA1 Beta-prop_RIG_2nd CFAP251_N ANAPC4_WD40 Beta-prop_SCAP Beta-prop_DCAF4 Beta-prop_IFT140_1st Beta-prop_VPS8 WDR90_beta-prop_4th NBCH_WD40 Beta-prop_NOL10_N PEP5_VPS11_N Beta-prop_HPS5 Beta-prop_WDR75_2nd Beta-prop_Aladin WD40_RFWD3 TPR_1 Beta-prop_ACSF4 TRM82_WD TPR_GEMI5 Beta-prop_DCAF12 Beta-prop_SPT8 Clathrin Beta-prop_WDR35_TULP_N TPR_IF140-IFT172
Other DBs
NCBI-GeneID: 4340097
NCBI-ProteinID: NP_001408006
LinkDB
Position
6:complement(join(2478937..2478956,2479411..2479522,2479712..2479856,2479973..2480079,2480192..2480285,2480372..2480568,2480931..2481002,2481124..2481238,2481680..2481796,2481873..2481964,2482065..2482241,2482366..2482440,2482531..2482671,2483291..2483479,2483918..2483983,2484065..2484215,2484338..2484406,2484913..2485061,2485146..2485277,2485376..2485701,2485787..2485823,2486546..2486600,2486724..2486785,2486909..2486929,2487084..2487086))
AA seq 907 aa
MPLRLEIKRKFAQRSERVKSVDLHPTEPWILSSLYSGSVCIWDYQSQTMVKSFEVSELPV
RSAKFISRKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDD
MLIKLWDWDKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTTKIWSLGSPDPNFT
LDGHQKGVNCVDYFTGGDRPYLITGSDDSTAKVWDYQTKSCVQTLEGHTHNISAVCFHPE
LPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAVGYMKGSRRMVIGYDEGTIMIKMG
REVPVASMDTSGKIIWAKHNEIQTVNIKTVGAGFEVTDGERLPLAVKELGSCDLYPQSLK
HNPNGRFVVVCGDGEFIIYTALAWRNRSFGSALEFVWSSEGEYAIRESTSRIKIFSKSFQ
EKKTIRPTFSAERIFGGILLAMCSSDFICFYDWADCRLIRRIDVNVKNLYWADSGDLVAI
ASDTSFYILKYNRDVVASYLESGKPVDEEGVEDAFELLHEVNERVRTGIWVGDCFIYNNS
SWRLNYCVGGEVTTMYHLDRPMYLLGYLANQSRVYLIDKEFNVMGYTLLLSLIEYKTLVM
RGDIERANDILPSIPKAQYNNVAHFLESRGMLEEALEIATDADYRFDLAVQLGKLEVAKA
IAMEAQSESKWKQLGELAMSTGKLDMAEECLVQAKDLSGLLLLYSSLGDAEGIEKLASQA
KEHGKNNVAFLCLFMLGKLEDCIQLLIDSNRIPEAALMARSYLPSKVSEIVAIWRNDLSK
VNPKAAESLADPSEYPNLFEDWQVALTVEKNVASRRVHYPPADEYLNHAEKSDMTLVEAF
KRMQVIEDEETEDALDENGEPDEEVLEENKVEESTDEAVEVDADEPEETVLVNGKEGEEQ
WVLTEHE
NT seq 2724 nt   +upstreamnt  +downstreamnt
atgccgctcaggttggagatcaagaggaagtttgcgcaacggtcggagagggtcaagtcg
gtggatctgcaccccacggagccatggatcctgtcgagtctttactccgggagcgtgtgc
atctgggactatcagtcgcagacaatggtgaagtcatttgaagtttcagaattgccagtg
cggtcagcaaaatttatttcacggaaacaatgggttgtagctggtgcagacgatatgttc
attcgtgtctacaactacaacacgatggacaaagttaaggtttttgaggctcatactgat
tatattagatgtgttgcagtccatccaacacttccatatgtgctttcatcatctgatgac
atgttgataaaattgtgggactgggataaagggtggatgtgcactcaaatctttgaggga
cattcacactacgtgatgcaagttactttcaatccaaaggatactaacacttttgcaagt
gcatctcttgaccgaactacaaagatatggagtttgggttctccggatccaaatttcaca
ctcgatggacatcaaaagggtgtgaactgtgttgactacttcactggtggtgacaggccc
tatttgatcactggttctgatgactccactgcaaaggtctgggattaccaaacgaagagc
tgtgttcagacacttgaaggacatacacacaacatttctgctgtttgtttccatcctgag
cttcctataatcattactggatctgaagatggcacagttcgcatatggcattcgacaact
tacagacttgagaacacgctaaactatggtcttgaacgagtctgggctgttggatacatg
aagggttcaagaaggatggtaattggttatgatgagggaactataatgataaaaatggga
cgtgaagtacctgtggcaagcatggataccagtggaaaaatcatttgggcaaaacataac
gagatacagactgtgaacatcaaaactgttggtgcaggctttgaggttacagatggggaa
agattgccattggctgttaaagaattaggaagttgtgatctttacccacagagcttaaag
cataaccccaatggaagatttgtcgtagtttgtggagatggtgaattcataatttatact
gcattggcttggaggaataggtcatttggatctgcattggagtttgtttggtcatcagaa
ggagagtatgctatcagggaaagtacatcaagaataaagattttcagtaaatcatttcag
gagaagaaaactattcgccctacattttcagctgaacgtatttttggtggaatattattg
gcgatgtgttccagtgatttcatttgcttttatgactgggctgactgtagactaatacgc
cgcattgatgtgaatgtcaaaaacctttattgggctgatagcggtgacctagttgcaata
gcaagtgatacatcattctacatactgaagtacaacagagatgtcgttgcgtcttatcta
gaatctggaaaacctgtggatgaggaaggcgttgaagatgcttttgagctgcttcatgag
gttaatgagcgagtgcggacagggatctgggttggagactgctttatttataacaattca
tcatggcgcctgaactattgtgttggtggcgaggtcaccacgatgtatcacttggatcgc
cctatgtacttgttgggatatctagcgaatcaaagccgagtttatcttattgacaaggaa
ttcaatgtcatggggtacacattacttcttagtttgattgagtacaagacacttgtgatg
cgtggggatattgaacgtgcaaatgatattttaccatccataccaaaggcgcaatataat
aatgttgctcatttcttggagtcaagaggtatgctggaggaagcacttgagatagctact
gatgctgattacaggtttgacctagctgtgcaacttggaaaattagaagttgcaaaggct
atcgcgatggaagcgcaaagtgaatctaagtggaagcagttgggtgaactggctatgtcc
acaggcaagctagatatggcggaagagtgccttgtgcaagcgaaggacttaagtggcctg
ttgctactatattcatctcttggagatgctgagggaatcgagaagcttgcttctcaagca
aaggagcatggcaaaaacaatgttgctttcctctgtctctttatgcttggtaaattggaa
gattgcatacaattgctgatagacagcaatcgtatacctgaagctgcgttaatggcacgt
tcttatcttcccagcaaagtttctgagatagtagcaatatggagaaatgacctcagtaaa
gttaatccaaaagctgcagagtctctggcagatccttctgagtatccaaatttatttgaa
gactggcaggttgcacttactgtagaaaagaatgttgcttctcggagggtccattatcct
cctgctgatgagtacttgaaccatgctgaaaagtcagacatgactcttgtggaagctttc
aaaaggatgcaggtcattgaagatgaggaaacagaagatgcactagatgaaaatggagag
cccgatgaagaggttttggaagagaacaaagtggaggagagcacagatgaagctgtcgaa
gttgatgctgatgagcctgaagagaccgttcttgtaaatgggaaagagggtgaggaacag
tgggtgctaactgaacatgagtaa

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