KEGG   Oryza sativa japonica (Japanese rice): 4340098
Entry
4340098           CDS       T01015                                 
Symbol
xrcc1
Name
(RefSeq) DNA-repair protein XRCC1 isoform X1
  KO
K10803  DNA-repair protein XRCC1
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    4340098 (xrcc1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:osa03400]
    4340098 (xrcc1)
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     4340098 (xrcc1)
SSDB
Motif
Pfam: BRCT PTCB-BRCT BRCT_2 RTT107_BRCT_5
Other DBs
NCBI-GeneID: 4340098
NCBI-ProteinID: XP_015641643
UniProt: Q5VQ75 Q0DEM9
LinkDB
Position
6:join(2487732..2487896,2488008..2488196,2489026..2489137,2490015..2490094,2490642..2490752,2491200..2491286,2491599..2491898)
AA seq 347 aa
MPESSSDPNNGRGKSSKRNLPSWMGSKDGEENPGKKKHMATHEKVQKGSDFSKLLDGVVF
VLSGFVNPERGTLRSQALDMGAEYRPDWTSDCTLLVCAFANTPKFRQVESNNGTIVSKDW
ILESHSQRKLVDIEPYLMHVGKPWRKNKELVESDEDQKKPHKEHQKQVDRSHIKTSPSAG
IEAKHSDVTSKQFSPTKIKQWAKNDLAQTISWLESQEEKPEPNELKAIAAEGVITCLQDA
IESLKQGNDVKGVAEQWSFVPHVINELAELDGRRKEGSLSKEQLSQLAIKCKKIYQAEFA
HMHDNDKKHQSKPRSDDAQYDSDDTIEMTEEEIDLACRQLPGVCGRQ
NT seq 1044 nt   +upstreamnt  +downstreamnt
atgcctgaatcgagctcagatcctaacaacgggagaggaaagtcatccaagaggaatctc
ccttcttggatgggttcgaaagacggggaggaaaatccaggcaagaagaagcacatggcc
acccacgagaaggtgcagaaaggatcggatttctccaaacttttggatggggtggtcttt
gtactttcagggtttgtgaaccctgaaagaggcacattgcgctcccaagcattggatatg
ggagccgagtatcgacccgattggacatcagattgcacacttctcgtttgtgcatttgcc
aatacccccaagtttcgacaagtcgaatcgaacaatggaaccattgtctcgaaggactgg
atcttagaatctcacagccaaagaaaacttgttgatattgagccttaccttatgcatgtt
ggaaaaccgtggagaaaaaataaagagctagttgaatctgacgaagatcagaagaagcca
cataaagagcatcagaagcaagttgatcgatctcatatcaagacatctccctctgcaggc
atagaggcaaaacattcagatgttactagtaagcaattttctccaacaaaaataaaacaa
tgggcaaagaatgatttagcacagacaatatcatggttagagagccaagaagagaagcca
gaaccaaatgagttgaaggcaatagctgctgaaggggttatcacttgtttgcaagatgcc
atagaatctctcaagcaagggaatgatgtcaagggagtggcggagcagtggagctttgtc
ccccatgtcatcaatgaactggcggaacttgatggaagaagaaaagagggatcgttatcg
aaagaacaactctcccagctagcaatcaaatgcaaaaagatttatcaggctgagtttgcc
cacatgcatgataatgacaagaagcatcagagcaagcctagatcagatgatgctcagtat
gacagtgatgacaccatcgaaatgacggaagaagagattgatctcgcatgcaggcaactc
cctggggtatgcgggaggcagtag

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