Oryza sativa japonica (Japanese rice) (RefSeq): 4340099
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Entry
4340099 CDS
T01015
Name
(RefSeq) pectate lyase
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa00040
Pentose and glucuronate interconversions
osa01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
4340099
Enzymes [BR:
osa01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
4340099
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SSDB
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
DUF2505
NosD
Motif
Other DBs
NCBI-GeneID:
4340099
NCBI-ProteinID:
XP_015642576
UniProt:
Q0DEM8
A0A0P0WSR5
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All DBs
Position
6:complement(2336431..2338207)
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AA seq
450 aa
AA seq
DB search
MDIYTTSHHSTIMAASSVTGSRRLCILFYLLTVVATVVTAASAHTAHNATADEEYWEKRA
EEARSFNRAAYVSDPVATLNRFNADVLRATTRRSLARYTGPCMATNPIDRCWRCRDDWAT
DRKRLARCVRGFGHRTVGGAAGKIYVVTDASDDEMVIPRKGTLRYGVIQDRPMWIVFARD
MIIQLRQELIVNHNKTIDGRGAQVHITGAQITLQGVQHVIIHNVHIHHSVPHGGGMIRDS
KRHYGLRTRSDGDGISIMSSSNIWIDHVSMSNCSDGLIDAVSGSTAITISNGHFTKHDHV
MLFGASNSDAQDEVMQITVAFNHFGKGLVPRCRFGFFHVVNNDYTHWLMYAIGGNMNPTI
ISQGNRFIAPDDLNAKEVTKREYTPYDEYKEWVWKSQGDVMMNGAFFNESGGQNERSYDQ
LDFIPAKHGKYVGQLTKFAGTLNCHVGMPC
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggatatatatacgacatcacatcacagcacaataatggcagcctcctccgtcacgggg
agccgccgcctctgcattctcttctacctcctcactgtcgtcgccaccgtggtcaccgcg
gcgtcggcgcacacggcgcacaacgccaccgccgacgaggagtactgggagaagcgcgcc
gaggaggcccgctcgttcaaccgcgccgcctacgtgagcgaccccgtcgccaccctgaac
cgcttcaacgccgacgtgctccgcgccaccacgcgccgctcgctggccaggtacaccggc
ccgtgcatggcgaccaaccccatcgaccgctgctggcgctgccgcgacgactgggccacc
gaccggaagcggctggcgcggtgcgtccgtgggttcggccacaggaccgtcggcggcgcc
gctggcaagatctacgtggtgaccgacgccagcgacgacgagatggtcatcccgaggaaa
gggacgctccggtacggcgtgatccaggaccggccgatgtggatcgtgttcgcgcgcgac
atgatcatccagctccggcaggagctgatcgtgaaccacaacaagaccatcgacggccgt
ggcgcgcaggtgcacatcaccggcgcccagatcacgctccagggcgtccagcatgtgatc
atccacaacgtccacatccaccactcggtgccgcacggcggcggcatgatccgcgactcc
aagcgccactacggcctccgcacgcgcagcgacggcgacggcatctccatcatgtcctcc
tccaacatctggatcgaccacgtctccatgtccaactgctccgacggcctcatcgacgcc
gtcagcggctccaccgccatcaccatctccaacggccacttcaccaagcacgaccacgtc
atgctcttcggcgccagcaacagcgacgcccaggacgaggtgatgcagatcaccgtggcg
ttcaaccacttcggcaagggccttgtgccgcgctgcaggttcggattcttccacgtcgtc
aacaacgactacacgcactggctcatgtacgccatcggtggcaacatgaacccgacgatc
atcagccaggggaacaggttcatcgcgcccgacgacttgaacgccaaggaggtgaccaag
agggagtacacgccgtacgacgagtacaaggagtgggtgtggaagtcgcagggcgacgtg
atgatgaacggcgccttctttaacgagtccggcggccagaacgagcgcagctacgaccag
ctcgacttcatccctgccaagcacggcaagtacgtcggccagctcaccaagttcgccggc
acgctcaactgccacgtcggcatgccatgctaa
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