Oryza sativa japonica (Japanese rice): 4340229
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Entry
4340229 CDS
T01015
Name
(RefSeq) transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 15-like
KO
K28361
transcription factor SPT/ALC
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
4340229
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
osa03000
]
4340229
Transcription factors [BR:
osa03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
4340229
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GFIT
Motif
Pfam:
HLH
bHLH_SAC51
bHLH_LHW
Ribosomal_S20p
CENPU
APT
DUF5010
Motif
Other DBs
NCBI-GeneID:
4340229
NCBI-ProteinID:
XP_025881998
LinkDB
All DBs
Position
6:join(3435812..3436150,3436260..3436325,3436437..3436502,3437553..3437870,3437971..3438034,3438149..3438237)
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AA seq
313 aa
AA seq
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MDEQRGRGGFDELVLLHQQQEQRRRREQQQEEEEEEEVRRQMFGAVVGGLAAFPAAAAAL
GQQQVDCGGELGGFCDSEAGGSSEPEAAAGARPRGGSGSKRSRAAEVHNLSEKRRRSKIN
EKMKALQSLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGVYLNPSYLSGALEPAQ
ASQMFAALGGNNVTVVHPGTVMPPVNQSSGAHHLFDPLNSPPQNQPQSLILPSVPSTAIP
EPPFHLESSQSHLRQFQLPGSSEMVFHGEIMPKHHLSSHQESLPGNEMNSIRKESSMLNT
NNFDGVSLSKEQS
NT seq
942 nt
NT seq
+upstream
nt +downstream
nt
atggacgagcagcggggacgcggggggttcgacgaactggtgctcttgcatcagcagcag
gagcagcggaggcggagggagcagcagcaggaggaggaggaggaagaggaggtgcggcgc
cagatgttcggcgcggtggtcggtgggctagccgcgttccctgcggcggcggcggctctg
ggacagcagcaggtggactgcggcggggagctgggcgggttctgcgacagcgaggcgggc
gggtcgtcggagccggaggcggcggcgggggcgcgcccgcgcgggggatccggcagcaag
cggagccgcgccgccgaggtgcacaacctctccgagaagaggaggaggagcaagatcaac
gagaagatgaaggcattgcagagcctgataccgaattccaacaagactgacaaggcatcc
atgcttgacgaagccatcgagtacctgaagcaactgcagctccaagtgcagatgctctca
atgagaaacggtgtttacttgaacccatcttatttatctggagcacttgagcctgcgcaa
gcatcacagatgtttgcagcccttggtggtaacaacgtcacagtggtgcaccccgggaca
gtgatgccaccagtgaaccaaagctcaggagctcatcatttgtttgatccattgaactct
cctccacaaaatcaaccacaatctctaatcctaccaagtgttcctagcacagccattcct
gagcctccatttcacctggagtcatcacagtcccaccttcgacaatttcagttgcctgga
tcctctgagatggtgtttcatggagagataatgccaaagcaccacctatcatcacatcaa
gaaagtctgccaggaaacgagatgaactccatcaggaaagaatcatccatgttgaacacc
aataattttgatggtgtctcacttagcaaagagcaatcatag
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