Oryza sativa japonica (Japanese rice): 4340375
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Entry
4340375 CDS
T01015
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
4340375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
osa03041
]
4340375
Enzymes [BR:
osa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
4340375
Spliceosome [BR:
osa03041
]
Complex C
Other components
Step II factors
4340375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
ResIII
nSTAND3
AAA_30
SLFN-g3_helicase
FtsK_SpoIIIE
T2SSE
AAA_16
ABC_tran
Motif
Other DBs
NCBI-GeneID:
4340375
NCBI-ProteinID:
XP_015641161
UniProt:
Q69TI7
LinkDB
All DBs
Position
6:join(4824933..4824988,4825095..4825144,4825237..4825317,4825829..4826045,4827187..4827574,4827797..4828000,4829141..4829301,4829368..4829553,4829699..4829930,4830497..4830699,4831041..4831175,4831334..4831517)
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AA seq
698 aa
AA seq
DB search
MPSFPSSGASPQKQQHNARRRQLIRQQRKSLPIASVEKRLIEEVRKNDTLIVVGETGSGK
TTQLPQFLYDAGFCQDGKVIGITQPRRVAAVTVAKRVAEECNDQLGKKVGYSIRFDDSTS
NATRIKYMTDGLLLREALLDPLLSKYSVIVVDEAHERTVHTDVLLGLLKKVQHSRSIYAN
KNGKILPDIQHQSQYFTLKACQGTKIDPLKLIIMSASLDAKCFSDYFGSAKAVHIQGRQY
PVDILYTYQPESDYLDATLVTIFQIHLEEGPGDILAFLTGQEEIESLDRLIQERARQLPP
QRSKIWTTPIYSSLPSEQQMNAFKPAPAGTRKVVLATNIAETSVTIPGIKYVIDPGMVKA
RAYNPVTGMESLIIIPVSKAQALQRSGRAGREGPGKCYRLFQESEFDKLVDSTVPEIKRC
NLANVVLQLKALGIDDIIGFDFMEKPSRTAILKSLEQLILLGALTDDYKLSDPVGRQMAR
LPLDPMYSKALIVASEFKCLEEMLIVVSMLSVESIFFSPREKLEEARAARKSFESSEGDH
ITLVNVYRAAKECLEKSKNANAKEKTMEKALNRWCRENFINYRSLRHACDVHSQIQGHVQ
QMGLNVSSCGDDMVLFRRCLTAAFFLNAAMRQPDGSYRALATSQSVQIHPSSVLFQKKPD
CAIFNELVRTSQNYVKDLTRIDPVWLAELAPQYYATED
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcgttcccttcctccggcgcttctccgcagaagcagcagcacaacgccaggagg
aggcagctgattcggcagcagaggaagtcgctccccatcgcctcagtggagaagaggctt
attgaagaggtgaggaagaatgacacgttgatcgttgtcggcgagaccggaagtggcaag
acaactcagttgccacaatttttgtatgatgctgggttttgtcaggatggaaaagtcatt
ggcataactcagcctcgaagagttgcagctgttactgtagcaaagcgtgttgctgaggaa
tgcaatgatcagttgggcaaaaaggttggctattctattagatttgatgattcgacatca
aatgcaacgaggattaagtacatgactgatggtttgcttttaagggaggcacttctggat
ccacttttgtctaagtatagtgtcatagttgttgatgaggcacacgaaagaactgtacat
actgatgtcttgttgggtttgctgaaaaaagtgcaacattcccgatccatttatgccaat
aagaatggaaagattttgcctgacatacaacatcagtctcaatattttactctgaaggca
tgccaaggaacaaaaattgatcctctaaaactgataattatgtctgctagtttggatgca
aagtgtttttcagattattttggcagcgctaaagctgtacatattcaaggacggcaatac
cctgttgacatactatacacttatcagcctgagtcagattatctggacgctacactagtt
actatctttcagatccatttggaggaaggaccgggggacattcttgcatttcttactggc
caagaggagattgagtcactggacagacttattcaggagcgtgctcgtcaacttccacca
cagagaagtaagatatggactacacctatttactcatctcttccatcagagcagcaaatg
aatgcttttaagcctgcaccagctggaactcgcaaggtggttttagcaacaaatattgca
gagacttctgtaacaatacctggtatcaaatatgttattgatcctgggatggtcaaagct
cgtgcttataatcctgtaactggaatggaatctctgatcattatccctgtttcgaaagca
caggctcttcagaggagtggccgtgccggacgagagggaccagggaagtgctaccgattg
ttccaagaaagtgagtttgataagctggtggattctactgtgcctgagatcaagcgatgt
aaccttgcaaatgttgtactacagctcaaagctcttggaattgatgacatcataggtttt
gattttatggagaaaccatcaaggacagctattttgaaatcattggagcagttaatttta
ttaggtgctctgactgatgattataagttgtcagatccagttggtcgtcagatggctagg
ctacctttggatccaatgtactccaaggcactaatagtagcaagcgaattcaagtgcttg
gaagagatgttgattgttgtctctatgctttcagtggaatctattttcttcagcccacgt
gagaagttagaagaggcaagagctgctaggaagagttttgaaagctctgaaggggaccac
ataaccttggtgaatgtatatcgagccgctaaagaatgcttggagaaaagcaaaaatgca
aatgccaaagagaaaacaatggaaaaggcattgaacagatggtgcagggaaaatttcatc
aattaccggtctctaagacatgcttgtgatgttcacagccaaattcagggccatgtccaa
caaatggggcttaacgtatcatcgtgtggggatgacatggttctgttccggagatgcctc
acagctgctttcttcttgaatgccgcaatgcgacagccagatggatcatacagggctctt
gcaaccagccagagcgtgcagatccatccgtcatcggtgctcttccaaaagaagccagat
tgtgccatcttcaacgagttggttcgaacgagtcagaattacgtcaaggacctgacccgg
atcgatcccgtgtggctggctgaacttgccccgcaatattacgccactgaggattga
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