Oryza sativa japonica (Japanese rice): 4340671
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Entry
4340671 CDS
T01015
Name
(RefSeq) protein CHROMATIN REMODELING 35 isoform X2
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
4340671
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
osa03400
]
4340671
DNA repair and recombination proteins [BR:
osa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
4340671
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
ERCC3_RAD25_C
RAG1_imp_bd
Motif
Other DBs
NCBI-GeneID:
4340671
NCBI-ProteinID:
XP_015643526
UniProt:
A0A0P0WVB5
Q652G9
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All DBs
Position
6:join(8268703..8269299,8269557..8269868,8270197..8270367,8271136..8272892,8272977..8272980)
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AA seq
946 aa
AA seq
DB search
MYYRRQRKASSEANANVFMPGGPNDISFPASNRDHDWGYGGVGKEWEASYARKLQLMNFL
SSLHQRTANPLVTTRMDANMDTPLEQKQKDSSAIIVLDSDDEDGYTEGCEQLTSENNKQQ
APSGLTSPYTTWIVSSAKDQVNGTLHVDGVQSTQIVPYYGQNAPLINQFPLQTSWQPSIQ
YERVILQKRPEEQRVQDLVAASHAEKIAETQVLLTLPTLPNERKRRKTEPTTLVDVDGGT
NLGKRKRKNHQNQAAVDSNLDLQQNDVPSQSYRTMIEEEKPVKESDGLEDLWKDFSLAAE
CTKLDTNEDMSNEKDVDDENEMDDDCNHDIRIHEDLGHVCRICGMIVRKAETIIDYQWKK
ASRTRTNYYESRSKDADEIDTGAVKVSEDFIVSDIAIHPRHAKQMRPHQLEGFSFLVKNL
VGDKPGGCILAHAPGSGKTFMLISFIQSFLAKYPSARPLVVLPKGILGTWKREFQRWQVE
DIPLYDFYSVKADKRVEQLEVLKSWEAQMSILFLGYKQFSRIICGDGDGNIAAACRDRLL
MVPNLLILDEGHTPRNRETDVLASLKRVQTPRKVVLSGTLFQNHVSEVFNILDLVRPKFL
KMESSRPIARRIMSQVAISGIRSLKGVHDSAFTESVEDTLLNDDNFTRKAHVIRSLRELT
KDVLHYYKGDILDELPGLVDFSVFLKLSTKQKEIVHKIEAYEKFKRSAVGTALYIHPCLS
EISEGDAADRASNLTDATVDSLIESIIIKDGVKAKFFFNILSLANSAGEKLLAFSQYILP
MKFLERLLVKRLGWHVGKEIFMISGDTSADDREVAMDQFNNSADAKVLFGSIKACGEGIS
LVGASRVIILDVHLNPSVTRQAIGRAFRPGQQKKVFVYRLVAADSPEVKFHETAFKKEVI
PKLWFEWSELCTTEDFKLNQVDIDDSEDELLEANAIRQDIKALYRR
NT seq
2841 nt
NT seq
+upstream
nt +downstream
nt
atgtattaccgcaggcaaaggaaggcttcttctgaggccaatgccaatgtgtttatgcct
gggggtccaaatgatatctcatttcctgcatcaaatagggatcatgattggggatatggc
ggtgttggcaaagaatgggaagctagttatgctcgcaaactccagttgatgaattttctt
tcttcactgcatcaacgcactgcaaatcctttggtaaccactagaatggatgctaacatg
gacactcctttggagcaaaaacagaaggacagctcagcaataatagttcttgattccgat
gatgaggacggatatacggaaggatgtgaacagctcacatctgagaacaataaacaacag
gcaccatctggactcactagtccttacacgacatggattgtatccagtgcgaaagaccaa
gtaaatggaaccttgcatgttgatggagtccaaagcactcaaattgttccatattatggt
caaaatgcaccgttaataaatcagttccctttgcaaaccagctggcaaccatctatccaa
tatgaaagggttatattgcagaaaagacctgaggagcaacgcgttcaagatctggtggca
gcaagccatgcagagaagatagcagaaacacaagttctccttactcttcctactcttcct
aatgagagaaaacgaaggaaaacagaacccaccaccctggtagatgttgatggtggaact
aacctaggaaaaagaaaaaggaaaaatcatcaaaatcaagcagcagttgattcaaacttg
gatttgcaacaaaatgatgttccttcacaaagctacaggactatgatagaagaggagaaa
cctgtaaaagaaagtgatggtctcgaggatctttggaaagatttttcattggctgctgaa
tgtacaaagcttgatacaaatgaagacatgtccaatgaaaaagatgtggatgatgaaaat
gagatggatgacgactgcaatcatgacattcgaattcatgaagatctaggccacgtatgc
cgtatttgtggcatgattgttagaaaggctgaaacaataattgattatcagtggaaaaag
gcttcaaggacaagaacaaattactatgaatcacgttcaaaggatgctgatgagattgat
actggtgctgttaaagtttccgaagatttcattgtctctgatattgccattcatccaaga
catgcgaagcaaatgagaccacatcagttggaaggattcagcttcctggtcaagaatcta
gtgggagacaaacctggaggttgcattctagctcatgctcctggttcagggaagacattt
atgctcataagtttcattcaaagcttcttagcaaagtatccttctgcaaggccccttgta
gtgcttccgaaagggattttaggtacttggaagagggagtttcagcggtggcaagtggag
gacataccactatatgatttctattctgttaaggctgacaaaagagtagagcaactggaa
gtcctcaaatcttgggaagcccagatgagcatactatttcttggatacaagcagttctca
cgaatcatctgtggtgatggagatggaaacattgcagctgcgtgtcgggacaggctgctt
atggtacccaacctacttatactagacgagggtcatacaccaagaaatcgggagacagat
gtactggcatcactaaaaagagtccaaacaccacgcaaagtggtcctgtctggtacactt
ttccagaaccacgtttcggaagtgtttaacatcttggaccttgtgcgccctaagtttctc
aagatggaatcatcccgtcctattgctagacgtataatgagtcaggtagcaatatcaggt
atcaggagtttaaaaggggttcatgacagtgcattcactgagtcagtggaagacaccctg
ctgaacgatgacaacttcactagaaaagcccatgttattagaagtcttagagaattaaca
aaagatgtgcttcactattacaagggtgatatcttagatgaactacctggcctagtagat
tttagtgtgtttttgaaactcagtaccaagcagaaagaaattgttcacaagatagaagcc
tatgagaagttcaaaagaagtgcagtggggactgcattgtacattcatccctgcctgtca
gaaatttcagagggtgatgctgcagatagggcgagcaacttgacagatgccactgttgac
agcttgattgagtctatcatcattaaagatggggtgaaagccaagtttttctttaacatt
ctgtctcttgctaactctgcaggagagaagttgcttgccttcagtcaatatatacttccc
atgaaatttttggaaaggttgttggttaagaggctgggctggcatgtagggaaggagatt
ttcatgatatctggtgatactagtgcagacgacagagaagtggcgatggatcagtttaac
aactctgccgatgcaaaagttttgtttggttccatcaaggcctgtggagagggaatctcc
cttgttggtgcatctcgagtcatcattctagatgttcatttgaacccatctgtcacccgt
caagcaattggacgtgcattcaggcccggacagcagaagaaagtgtttgtgtacaggctt
gttgctgctgattctccagaggtgaagttccatgaaactgcattcaagaaagaagttatc
ccaaagctatggtttgaatggagtgagctctgcactactgaagacttcaaactgaatcaa
gttgatattgatgactctgaagatgaacttttggaggctaatgctatccgccaggatatc
aaggctttgtatagaaggtaa
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