Oryza sativa japonica (Japanese rice): 4340675
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Entry
4340675 CDS
T01015
Name
(RefSeq) THO complex subunit 4D
KO
K12881
THO complex subunit 4
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03013
Nucleocytoplasmic transport
osa03015
mRNA surveillance pathway
osa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
4340675
09122 Translation
03013 Nucleocytoplasmic transport
4340675
03015 mRNA surveillance pathway
4340675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4340675
03041 Spliceosome [BR:
osa03041
]
4340675
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
4340675
TREX complex
4340675
Spliceosome [BR:
osa03041
]
Complex C
Other components
EJC/TREX
4340675
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
4340675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
FoP_duplication
RRM_3
Motif
Other DBs
NCBI-GeneID:
4340675
NCBI-ProteinID:
XP_015644210
UniProt:
Q652G7
B9FSK8
LinkDB
All DBs
Position
6:complement(join(8299038..8299218,8299925..8299981,8300085..8300281,8301610..8301678,8301783..8301926,8302425..8302661))
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AA seq
294 aa
AA seq
DB search
MATSLDMSLDDMIKNNRNSRGRGRGRSQGGGRGRGDGQRFSYGSGRGRGAGTFRGRGVGV
PSRRPLGVSTRSSSYAIAKSFNKTKDIVWRQDLFEDSMVAAGLSVTESSTKLYISNLHYG
VTKEDIQELFSEMGHLKHCAVHYDNNRRPTGSAEVIFTRRSEAVAALKRYNNVRLDGKPM
KIEVIGADLGMAAPSAPRVSVVPGARGRGQREVVMMPGGSGFGRGAAGSSNFIPGWKRNN
FAQRGGQGRGRGRGRNNFGRGRGRGYVRKGPVEKSAEQLDKELDSYHSGAMNVD
NT seq
885 nt
NT seq
+upstream
nt +downstream
nt
atggcgacatctttggatatgtcactggacgatatgattaagaacaacagaaattctagg
gggagaggaaggggtaggtcacagggaggaggtcgaggcagaggtgatggccaaaggttc
agctatggttcagggcgtggacgtggtgctggcaccttccgtggaaggggagtaggagtg
ccttcacgaaggccacttggtgttagtactcggtcatcatcgtatgctattgccaagtca
ttcaacaaaaccaaggatattgtatggaggcaagatctgtttgaggacagcatggttgct
gctggcctttctgtgacagaatctagtacaaagctgtatatttcaaacttgcactatgga
gtgacaaaagaagatatacaggaacttttttccgagatgggtcatttgaagcattgtgct
gttcattatgataacaatagacgcccaactggttcagctgaggtgatattcactaggagg
agtgaagcagttgcggctttaaaacgatataataatgtgcgccttgatgggaagccaatg
aagatcgaagtgataggagcagatttgggtatggctgctccttcagcaccccgtgttagt
gttgtccctggtgcaaggggtagaggacagcgagaagttgtaatgatgcctggtgggagt
gggtttggtcgaggtgcagctggttcatctaatttcattcctgggtggaagcgtaacaat
tttgcacaaagaggtgggcaaggccgaggtcgtggccgtggacgtaataactttgggcgt
gggcgtgggcgtggctatgttcggaagggacctgtggagaaatcagctgagcaattggac
aaggagctggatagctatcattccggggcaatgaatgtcgactaa
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