KEGG   Oryza sativa japonica (Japanese rice): 4340825
Entry
4340825           CDS       T01015                                 
Name
(RefSeq) enhancer of mRNA-decapping protein 4 isoform X2
  KO
K12616  enhancer of mRNA-decapping protein 4
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    4340825
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4340825
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     4340825
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     4340825
SSDB
Motif
Pfam: Ge1_WD40 EDC4_C WD40_WDHD1_1st WD40 WD40_CDC20-Fz WD40_Prp19 WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 Beta-prop_TEP1_2nd WDR55 DUF445 Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_TEP1_C Beta-prop_HPS5 Beta-prop_EDC4L DUF6277
Other DBs
NCBI-GeneID: 4340825
NCBI-ProteinID: XP_015643577
UniProt: A0A0P0WVR0 Q5ZA32
LinkDB
Position
6:join(11400163..11400933,11401577..11401626,11401719..11401875,11401963..11402181,11402666..11402794,11403867..11404440,11404537..11405396,11406019..11406378,11406451..11406570,11407092..11407262,11407387..11407545,11407692..11407817,11408025..11408333)
AA seq 1334 aa
MASPSGNPNPTPNQPFELNRLFKQHPPASASASAAPNPNHHPAPAGIFPGAAAPAPHHGV
VVPPPMTSGGGPYSYPPATPPFHRGPYLPPYPNDPHLAFAGNPNPPAAAAAPNPAGARLM
QLLGNTAPTHLESAVSMPMPSEFSAAAAVAPPAPLPAMPSAPPARMPSSSSSKMPRGRLL
GPGDRAVHDVDSRLPGEAQPPQLEVTPITKYTSDPGLVLGRQIAVNRTYIVYGLKLGNIR
VLNINTALRSLLRGHTQRVTDMAFFAEDVHRLASASVDGRIYVWKIDEGPDEQNKPQITG
KIEIAIQIVGDAETYHPRICWHSHKQEILFVGVANCVLKIDTTKVGRGMDFSREEPLKCP
LDKLVDGVHLVGKHDADITDLSLSQWMTTRLASASKDGMVKIWDDRKSVPLSVLKPHDGQ
AVYSVSFLTAPEHPQHINLITAGPLNREVKIWASTNDEGWLLPSDSETWRCTQTLELVSS
LEHRFEEAFFNQVAVLPQASLILLANAKKNAIYAVHVEYGPDPASTRLDYIADFTVAMPI
LSLTGTHESQLDTEQIVQVYCVQTMAIQQYGLELSLCLPPTADNPGFGRDPAISHVYERP
PAEVTVVESSKETSLIDSSVVGPTKPASNNQALEANVPSQVQSTTPPSSIDLGYLEEGAL
RRGPSRGPSLGDRDIDPSSLDYSSKKRMDSDGASGQGSFGRKDSFGKEEPRGSQGDGTKT
SDPRPMFKVGGNATHLITPSEIISGVLSSPETIATGSSQNVEVDAKHVDGRKSERSVELE
AVKETQIVHEKRERPPKTAEQTVNTISERLVTTDKYSVEDSQSRSADGSVSTLLKHPSGA
GDENTVSEAPEKTSDGYASRNLQLTLATKEEKVLHPQVSRQLSPSTSTYNSADSSHEPPS
NVNPPIDNVPQVGIQETLQQLMAMHSDLQKQLSTIVSAPIAKEGKRIETSLGRNMEKSIK
ANIDAMWARFQEENAKHEKAERERMQHITTLITTAVNKDIPVMLEKSLKKEISSVGPAVA
RTTAPIIEKSLSSAVSDSLQKVLGDKVVNQLDKSLSTKLEATVARQIQTQFHTSAKQALQ
DALRSSFESTIIPAFEQSCKTMFEQVDGAFQKGMSEHGAAIRQQVATAHTPLAQTLRETI
ASASSINQGLASELLDGQRKLLALVSSGGSLSHNTSVLQPSNGPVASLPEVDAPLDPVKE
LSRLISERKFDEAFTMALQRSDVSIVSWLCSQVDLHELCRMNPIPLNQGVLLALFQQLAC
DIVNDTPRKLEWMTAVAVAISPTDPMIAVHVRPIFEQVYGVLNHQRSLPASSSSEATNIR
LIMHVINSVLLTYK
NT seq 4005 nt   +upstreamnt  +downstreamnt
atggcgtctccctcggggaaccctaaccccacccccaaccagcccttcgagctcaaccgc
ctcttcaagcagcatccccccgcctccgcctccgcctccgccgccccaaaccctaaccac
caccccgcccccgccggcatcttccctggcgccgccgcccccgccccccaccacggcgtc
gtcgtcccgccgccgatgacgtccggtggcgggccctactcgtacccgccggccaccccg
cctttccaccgggggccttacctccctccctaccccaacgacccccacctcgccttcgcc
gggaaccctaacccccccgccgccgccgctgctcccaacccggcgggcgccaggctcatg
cagctgctcgggaacacggcgcccacgcacctcgagtcggcggtgtccatgccgatgccg
tcggagttctccgccgccgcggctgtggcgccgcccgcgccgctgcccgcgatgccgtcc
gcgccgcccgcgaggatgccgagcagcagcagcagcaagatgccgagggggaggctcctg
gggccaggggaccgggccgtgcacgacgtggactcgcggctgccaggcgaggcgcagccg
cctcagctggaggtgacgcccatcaccaagtacacgtcggacccggggctggtgctcggc
aggcagatcgccgtgaaccggacctacatcgtgtatggcctcaagctcggcaacatccgc
gtgctcaacatcaacaccgcgcttcgctcgctcctccgcgggcacacacagagggttacg
gacatggctttctttgcggaagatgtccatcggttagcaagtgcaagtgtagatgggcgg
atctatgtatggaagattgacgagggacctgatgagcagaataaaccacaaatcacagga
aagattgaaattgccatacagattgtaggagatgctgaaacttaccatccaagaatatgt
tggcactcccataagcaagagattctgtttgttggagttgctaactgcgtcttaaaaata
gacacaacaaaagtaggaagaggaatggacttcagtagagaagaacctcttaaatgccca
ctcgacaagctggtcgatggcgttcacttggttggtaaacatgatgcagatattacagat
ttgtccctatctcaatggatgactactcgtcttgcttccgcatcaaaagatggcatggta
aagatctgggatgatcgcaaatctgtgcctctgtctgttctgaaaccacatgatggtcaa
gctgtttactctgtttctttccttacggcacctgagcatccccagcatataaatctcatc
acagcaggccctctcaatcgagaagtaaaaatttgggcttccactaatgatgaaggttgg
ttgttgccaagtgactctgagacatggagatgcactcaaacactggagctcgtgagttct
ctggaacataggtttgaggaagcatttttcaaccaagtagcagtgttgccacaagctagc
cttattttgcttgcaaatgccaaaaagaatgctatttatgctgtgcatgttgaatatggc
ccagatcctgcttctactagattggactatatagcggattttacagttgcaatgcctatt
ctaagtctgacaggaacacacgaaagccaactggatactgaacagatagttcaagtgtat
tgtgtccagacaatggctatccagcagtatggattggaattatctctttgtttgcctcct
acagctgataatcctgggtttggtagagatccagctatttctcatgtgtatgagagacct
ccagcagaagtaactgtggtggagtcatccaaggaaactagtctgattgattcctctgtt
gttggtccaactaaaccagcaagcaataatcaggccctagaagcgaatgtcccttcgcaa
gttcaatccacaactcctccatcaagcattgaccttggatatttagaagaaggtgccttg
agaagaggtccttcaagaggtccatctcttggtgatcgtgatatagacccgtcatctctt
gattattcaagtaagaaaaggatggattctgatggtgcaagtgggcaaggttcatttggt
aggaaggatagtttcggaaaggaagagccaagaggcagccagggtgatggtacaaaaacc
tcagatcctcgtcctatgtttaaggtgggaggaaatgctacgcacttgataactccatct
gaaattatttcaggtgtcctttcgtctccagaaacaattgctactggcagttctcaaaat
gtagaagtggatgctaaacatgtggatgggagaaaatcagagcgaagtgttgaacttgaa
gctgtcaaggagacacaaattgttcatgagaaaagggagagacctcccaagactgctgaa
caaactgtaaacacaatcagtgaacgcttggtaacaactgacaaatacagtgtggaagat
tcacaatctcggagtgctgatggatcagtatctacacttttgaaacatccttctggtgct
ggggatgaaaacactgtaagtgaagctccagagaaaactagtgatggttatgcttctagg
aacttgcagttaaccttggctaccaaggaggagaaagttcttcatcctcaagtttctagg
cagttatctccttctacaagcacttacaactctgctgattcctctcatgaacctccaagc
aacgtaaaccctcctattgataacgttccacaagttggtattcaagaaacactacaacag
ctaatggccatgcatagtgacctgcaaaagcagctgagcacaattgtatctgctcctatt
gcaaaggaaggcaaaaggatcgagacatctttaggtcgtaacatggaaaagtccattaag
gcgaacattgatgccatgtgggcccgtttccaggaggaaaatgcaaagcatgaaaaggct
gaaagagagcgtatgcagcatatcactactctcatcacaactgctgtaaacaaggatatt
cctgttatgctggagaagtccctaaagaaagaaatatcttcagttggacctgctgttgca
cggacaacagctcctatcattgagaaatcactatcttctgctgtttctgattcactccag
aaagttcttggtgacaaggttgtgaatcaactggacaaatccctaagtacaaaacttgaa
gctacagtagctaggcagatccaaacgcagtttcatacgtctgccaagcaggcccttcag
gatgctttgcgctctagctttgagtcaacaatcattccagcatttgaacaatcttgcaag
acaatgtttgagcaagtagatggtgcattccagaaaggcatgtctgagcatggtgctgct
atccgtcagcaggttgcaacagcacatactccactagcacaaactctcagggaaacaatc
gcttcagcatcatcgataaaccagggtcttgcatcagagttgcttgatggacagcgtaag
cttttggcacttgtttcatcggggggctccttatcgcataatacaagtgttctgcagcct
agtaatggaccagtggctagtctccctgaggtcgatgctccactggatcctgttaaggag
ctaagcagactgatatctgagcgcaaatttgatgaagcatttacaatggctcttcaaaga
agtgatgtctccatagtgtcttggctgtgctctcaggtcgatctgcacgagttatgcaga
atgaaccccattcctctcaaccaaggggtcctgttggcccttttccagcaactagcatgt
gacatcgtcaatgacacgcccagaaagcttgagtggatgacggctgttgctgttgcaatc
agtccaacagatcctatgatcgctgtgcatgtgaggccgatattcgagcaggtctatggc
gttttgaaccaccaacggtcactgccagcaagcagttcctcggaagcgaccaacatccgt
ttgatcatgcacgtaatcaactcggtgctgctgacctacaagtga

DBGET integrated database retrieval system