Oryza sativa japonica (Japanese rice): 4340826
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Entry
4340826 CDS
T01015
Symbol
HRD1
Name
(RefSeq) eRAD-associated E3 ubiquitin-protein ligase HRD1
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa04120
Ubiquitin mediated proteolysis
osa04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
4340826 (HRD1)
04120 Ubiquitin mediated proteolysis
4340826 (HRD1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
osa04121
]
4340826 (HRD1)
Enzymes [BR:
osa01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
4340826 (HRD1)
Ubiquitin system [BR:
osa04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
4340826 (HRD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-ANAPC11
FlxA
zf-RING_16
zf-RING_11
zf-RING_5
zf-HC5HC2H
Motif
Other DBs
NCBI-GeneID:
4340826
NCBI-ProteinID:
NP_001408487
LinkDB
All DBs
Position
6:complement(join(11417943..11418032,11419004..11419211,11420487..11420628,11420704..11420906,11420981..11421130,11421213..11421389,11421988..11422520))
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AA seq
500 aa
AA seq
DB search
MIRLQTYAAFSLMATATAVYYAFSSREQFYPAMVYLSTSKICFVLLLNTGLVAMCVAWQL
VKRLFLGTLREAEVERLNEQAWREVVEILFAVTIFRQDFSVSFLAMVAALLLVKALHWLA
QKRVEYIETTPSVPMLSHARIVSFMLFLLVVDCLFLSNSLRSLIHKREASVAIFFSFEYM
ILATSTVSTFVKYIFYVSDMLMEGQWEKKAVYTFYLELISDLVHLSLYMLFFIAIFLNYG
VPLHLIRELYETFRNFRIRIADYVRYRKITSNMNERFPDATADELNASDATCIICREEMT
TAKKLLCGHLFHVHCLRSWLERQHTCPTCRAPILPPDNGRTAARPHGVHPGVQPVPGNGT
PGSERAAGENISRRQAKLEAAASAASLYGRSFAYPPANNLNRYSTPPQSTSNGPQSGEAS
TSNQSPKGHATADPSAPTFYARGAVSSVTTTRELESSLQKAYENAIKSQIEMLQIQLQMF
QHGATSSATNNENGEHTKSD
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgattcggctgcagacgtacgcggcgttcagcctgatggcgacggcgacggcggtgtac
tacgcgttcagcagcagggagcagttctacccggcgatggtgtacctctccacctccaag
atctgcttcgtgctgctcctcaacacgggcctcgtcgccatgtgcgtcgcctggcagctc
gtcaagcggctcttcctggggacgctccgggaggccgaggtggagcggctcaacgagcag
gcgtggcgggaggtggtggagatcctcttcgcggtcaccatcttcaggcaggacttctcc
gtctccttcctcgccatggtcgccgcgctgctgctcgtcaaggcgctgcactggctcgcg
cagaagagggtcgagtacatcgagaccacgccctccgtgcccatgctgtcgcacgccagg
atcgtctccttcatgctgttcctgctcgtcgtcgactgcctcttcctgtccaactcgctc
aggtcgctcatacacaagcgggaggcgtctgttgcaatcttcttttcgtttgagtacatg
atactagcaacatccacagtatcgacattcgtgaaatatatattctatgtcagtgacatg
ctaatggaaggtcaatgggagaaaaaggcagtgtatacattttacttggagctcatcagt
gaccttgtacacttgtctttgtatatgctcttcttcatagctatcttcctgaactatggt
gtcccactgcacttgatacgtgagctgtatgagacatttcgcaacttcagaatccgtatc
gcggattatgtacgctacagaaagataacttccaacatgaatgaaagatttccagatgcc
acagcagatgagctcaatgcgagtgatgctacatgtattatttgccgtgaggagatgacc
acagcaaaaaagctgctttgtgggcacctgttccatgtccattgtttgaggtcatggtta
gaacgccaacacacttgccctacatgtagagctccaattctgcccccagataatgggcgt
actgcagcacgtccgcatggagttcatcctggagttcagcctgttccaggtaatggcaca
ccaggttcagaacgagcagcaggtgagaacataagcaggcgccaagcaaaacttgaagca
gctgcttcggctgcttccctatatgggagatcctttgcttatcctccagcgaacaatttg
aacaggtattcaactcctccacagtctacatcaaatggtccacaatcaggagaagcaagt
acttccaatcaatcgccaaaaggccatgcaactgccgatccttcagcgcctactttttat
gcacgtggtgctgttagttcagtgacaactaccagggaacttgaaagttcactgcagaag
gcatatgaaaatgctataaagagccagatagagatgttgcaaatccagctgcaaatgttt
cagcatggggctacttcatcagcgactaacaatgaaaacggtgagcacacaaaaagcgac
tga
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