Oryza sativa japonica (Japanese rice): 4340886
Help
Entry
4340886 CDS
T01015
Name
(RefSeq) nuclear poly(A) polymerase 1
KO
K14376
poly(A) polymerase [EC:
2.7.7.19
]
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
4340886
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4340886
Enzymes [BR:
osa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
4340886
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Poly(A) addition factors
4340886
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAP_NTPase
PAP_central
PAP_RNA-bind
NTP_transf_2
MTPAP-like_central
Nrap_D2
Motif
Other DBs
NCBI-GeneID:
4340886
NCBI-ProteinID:
XP_015643768
LinkDB
All DBs
Position
6:join(12588691..12588795,12588890..12588967,12589052..12589159,12589522..12589584,12589664..12589825,12590064..12590177,12590303..12590365,12590555..12590884,12591510..12591674,12591750..12592685,12594331..12594401,12594551..12594602)
Genome browser
AA seq
748 aa
AA seq
DB search
MAKSNNGNGYLGVTEPISLSGPTEKDVVRTQEVEKCLADAGLYESQEEAVSREEVLGKLD
QIVKAWIKKATRASGFGDQFVQEANAKIFTFGSYRLGVHGPGADIDTLCVGPRHATRTEY
FFQALYDMLVDMPEVTELHPVPDAHVPVLKFKLNGVSIDLLYANLTHVVIPEDLDLSHDS
ILHNVDEQTVRSLNGCRVTDKILRLVPNILTFRTTLRFMRFWAKRRGVYSNVIGFLGGIN
WALLVARICQLYPNASPSMLISRFFKVYSKWKWPNPVMLCHIEEGSLGLLVWDPRRNFRD
RGHHMPIITPAYPSMNSSYNVSISTRHVMVQEFTRASDICQAIDERKADWDALFEPYPFF
ESYRNYLKIEITARNEDDLRNWKGWVESRLRTLVLKIERFTREMLLSHPNPRDFIDSSRP
LHCFYFMGLWKKQISQAQEAEQYDIRAIVNEFKSNIHAYQHWREGMEIEVSHVKRKDIPS
FVFPGGIRPSRPSRTVGKEARAVSRSNISANVQERNVPSMAQPMPYKSSEVNKIPSDPHG
GYQSQERNNAVVSSLPCEETGHMFNGYANLHTESVELEHLRSYKGSTSVPENHVVHDLVK
PPESMPPNSIHVYPSPTNGLGHLLDSSCKKPADIIVNKTTNFSSAVLAVPDELDELDSHQ
VKVNQKDLTAVDQGLSLEHKVGSNGGKAGTTGSPDNNHLKRKAEEELEPLELAAPLVRPP
APTSMTQRRPLRLRLSTVVQPKPAEGTS
NT seq
2247 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagagtaacaatggtaatggctacctcggtgtgactgagccaatctcattgagt
ggtccaactgagaaggatgttgtccgtacgcaggaggttgagaagtgtcttgctgacgct
ggcctgtatgaaagccaagaggaagctgtctcacgagaagaggttttaggcaaactggac
cagattgtcaaggcttggattaagaaggcaactcgagctagtggttttggcgaccaattt
gtgcaagaagcaaacgcaaagatttttacttttggctcataccgactaggggttcatggc
cccggtgcagatattgatacgctttgtgtgggtccaaggcatgcaactcgaactgaatac
tttttccaggctctttatgatatgctagttgatatgccagaggtcacagagttacatcca
gtgccagatgctcatgttcctgttttgaaattcaaacttaatggggtttctattgatctt
ttatatgctaatcttacacatgttgttattcctgaggacctggatctttcgcatgactct
atattgcacaatgttgacgaacaaactgtccgaagtcttaatggatgccgagttactgat
aaaattctacgattggttccaaatattctgactttccggacaaccttgagattcatgaga
ttttgggcaaaacgccgtggagtctactcaaatgttatagggtttcttggtggtataaac
tgggcacttcttgttgctcgtatatgtcaactgtacccaaatgcatcaccaagcatgttg
atatctcgttttttcaaagtctacagcaagtggaagtggcctaatcctgttatgctttgc
catattgaagagggttctcttggtcttcttgtgtgggacccaaggagaaattttagagac
aggggtcatcatatgcctataattacacctgcttatcctagtatgaattctagctataat
gtatctatcagtactaggcatgtgatggtccaagaattcacacgagcttctgatatctgt
caggcaatagacgaaaggaaagcagactgggatgctttgtttgagccatatccatttttt
gaatcgtatagaaattatctaaagattgagatcacagcaagaaatgaagatgacctcagg
aattggaaaggttgggtagaatcccggcttcgtacgcttgtattaaagattgaacgattt
acacgtgagatgctcctctcacatcctaatcctagagatttcatcgacagctccaggcca
ttgcattgtttttactttatgggtctctggaaaaaacaaatcagccaagctcaagaagct
gagcagtatgacattagagcaattgtgaatgaatttaaaagcaatatccatgcatatcaa
cactggagagaaggaatggaaattgaagtttcccatgtaaaaagaaaagatatcccatca
tttgtttttcctggtggaatccgtccttctcgcccatcaagaacagttggcaaggaagct
cgggctgtttcaagaagtaatatttcagctaatgttcaagaaagaaatgttccaagcatg
gcccagcctatgccatataagagtagtgaagtaaacaaaattccgtcagatcctcatggt
ggctatcagtcgcaagaaagaaataatgcagtggtctctagtttgccctgtgaagaaact
ggccatatgttcaatgggtatgcaaatctccatacagaatctgttgagctggaacacttg
agaagctacaagggaagtacatctgttcctgagaaccatgttgtgcatgatttagtcaag
ccaccagagagcatgccacctaactcaatccatgtttatccaagtccaacaaatggattg
ggccatcttttagatagttcttgtaaaaaaccagcagacatcattgtaaataaaaccaca
aatttctcttcagctgtcctagcagtacctgatgaacttgatgagctggattctcatcaa
gtgaaggtaaatcagaaagatttaactgcagtagatcaaggattatctttggagcataaa
gttggaagtaatgggggcaaagcaggaaccacaggttcacctgataacaatcatctgaag
cgtaaagctgaggaagagcttgagccacttgagcttgctgccccactagttcgccctcct
gcaccaacgtccatgacccagaggaggcccttgagactgagattgtcaactgtggtgcaa
cccaaacctgctgaaggaacttcatga
DBGET
integrated database retrieval system
