Oryza sativa japonica (Japanese rice): 4341164
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Entry
4341164 CDS
T01015
Symbol
OsC3H43
Name
(RefSeq) zinc finger CCCH domain-containing protein 43 isoform X1
KO
K03260
translation initiation factor 4G
Organism
osa
Oryza sativa japonica (Japanese rice)
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4341164 (OsC3H43)
03012 Translation factors [BR:
osa03012
]
4341164 (OsC3H43)
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
4341164 (OsC3H43)
mRNA cycle factors
Stress granule specific factors
4341164 (OsC3H43)
Translation factors [BR:
osa03012
]
Eukaryotic type
Initiation factors
eIF-4
4341164 (OsC3H43)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
MIF4G
zf_CCCH_4
zf-CCCH_2
zf-CCCH_4
Torus
Caulimovir_coat_dom
Motif
Other DBs
NCBI-GeneID:
4341164
NCBI-ProteinID:
XP_025882269
LinkDB
All DBs
Position
6:join(19956978..19957355,19957950..19958045,19958244..19958453,19959105..19959170,19959456..19959557,19959693..19959887,19959973..19960091,19960224..19960311,19960408..19960758,19961670..19962200)
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AA seq
711 aa
AA seq
DB search
MPQDDDWFWGRPTPVVVGDGETTSKPKPPVAGKTKKVEEQHPRRPGEPDCSYYVKFGSCK
FGISCVYNHPDPRPQHGADDKKPAEQFPRRPGEPDCSYYVKFGSCKFGMNCRFNHPPRMP
VPPQQEYFSGNACHCHHIEGKSKVEQVKLNVLGLPLRPGTGLCSYYMNRGICKFGTNCKF
DHPDPGSDHEKWVVSSNANQVSSQVNIYSVLDHGESNEHTFTSEEVHQPGIPSFHQRISY
TRDQLLQLCQNVEVPKDILKFCQDINVELNGEDKISGFGAEKDHVQTPSYKRFDATDSRD
WHSWSAQTNWEQKFWDNFSEAKEPYSLGWKQEKFNKPDQSSFHFDSKDQWLKFIKCTPCK
STLIKAEVPLSIQRGIISGKDEVLKTLKSILNTFSPKMFDLQKGQLIETRISSADILKDV
INLIFEKVVAEPAFCSTYAQLCTYLNQNLTPFPPEDCDCEEITFKQALSNKCQEIFESAH
TVCSEIGKLIGQDREMEQRDKERVVKLETLGNINFIRALLKKKLITNKIIDHIVQAVMDC
CKFRFEPLGKVDLLNIIFEGMLDSDSAGDESNICVNAMIGGNKSSIASNDVEMTRKNVNR
QNEEAILQKSYDEVPNNKMDPQKNYADGAISYLIEKEKPTNLESSVRICRGGCSISEIME
LVVDAGAVEGSDEHFMATLLFIKPEYREIFLTLDTREGRLGWLKRMYKVKE
NT seq
2136 nt
NT seq
+upstream
nt +downstream
nt
atgcctcaggacgatgactggttctgggggcgcccgactcccgtcgtcgtcggcgacggc
gagacgacgtcgaagccaaagccgccggtggcgggaaagacgaagaaggtggaggagcag
cacccacggcgaccgggggagccggactgcagctactacgtcaagttcgggagctgcaag
ttcggcatcagctgcgtgtacaaccacccggatccgaggccgcagcatggcgccgacgac
aagaagccggccgagcagttcccgcggcggcccggcgagcccgactgcagctactacgtc
aagttcgggagctgcaagtttgggatgaattgcaggttcaaccaccctccccgcatgcca
gtgccaccacaacaagagtatttctctgggaatgcatgccactgccaccatattgaaggc
aaaagtaaagttgagcaagtaaagctgaacgttcttgggcttccacttcgtcctgggaca
gggttgtgctcatactacatgaaccggggaatctgcaaatttggcactaactgcaagttt
gaccacccagatccaggctcagatcatgagaagtgggtcgtttcaagtaatgccaatcaa
gtttcctctcaggtgaacatttactcggtgcttgaccatggagaatcgaatgagcatact
tttacctccgaagaagtccatcagccagggattccaagttttcaccaacgaatcagttac
acaagggaccaacttctccaactttgtcagaatgtcgaagtgcccaaggacatcttaaaa
ttttgtcaagatattaatgttgaactgaatggtgaagataaaatttcgggatttggagca
gagaaagatcatgtacaaactccatcatataaacggtttgacgcgacagacagccgtgac
tggcattcatggtctgcacaaactaattgggaacagaaattttgggacaacttctctgaa
gcaaaagaaccctattctttaggttggaagcaagagaaatttaacaagcctgaccaatca
agcttccactttgattctaaagatcagtggttaaaatttataaagtgtacaccctgcaaa
agcactttaattaaggctgaagtccctttgtcaatccagagaggcattatctctggcaaa
gatgaagttctgaaaacattgaaaagtatactaaacacattttcaccaaagatgttcgat
cttcagaagggccagctaatagaaacaagaatctctagcgctgatattttgaaggatgtt
attaatcttatatttgaaaaggttgttgctgagccagccttctgttcgacgtatgcgcaa
ctttgcacatatctaaatcaaaacctcacaccattccctcctgaagactgtgattgtgaa
gaaattacgttcaaacaagcactgtcgaacaaatgtcaagaaatattcgaaagtgctcac
accgtatgttctgagattggcaaattgattggacaagaccgagagatggagcaacgggat
aaagaaagggtagtgaaacttgaaacactgggaaatattaatttcattcgagccctgctc
aagaaaaagttgatcacaaataagataatagatcacattgttcaggcagtgatggattgt
tgtaagtttcgctttgaaccacttggaaaagttgatttgctaaatataatatttgaaggc
atgctggattcagattcagcaggtgatgaatctaatatttgcgtcaatgctatgattggt
ggcaataaatcttccatagcttcaaatgatgtcgagatgactcgtaagaatgtcaatagg
caaaatgaagaggcaatattacaaaaatcttatgatgaagtcccaaataacaaaatggat
cctcagaaaaattatgcagatggagcaatcagttatctcattgagaaagagaagccaact
aacttagaatcatctgtgaggatctgtcgaggaggatgcagtatttcagagataatggag
ttagttgttgatgcaggagctgtggaaggcagtgatgagcatttcatggctaccttatta
tttattaaacctgaatatagggaaatatttcttacccttgatacacgtgaaggaagactt
gggtggctgaaaaggatgtacaaggtgaaggaataa
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