Oryza sativa japonica (Japanese rice): 4341840
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Entry
4341840 CDS
T01015
Symbol
OsC3H45
Name
(RefSeq) zinc finger CCCH domain-containing protein 45
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
4341840 (OsC3H45)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
osa03021
]
4341840 (OsC3H45)
03019 Messenger RNA biogenesis [BR:
osa03019
]
4341840 (OsC3H45)
Transcription machinery [BR:
osa03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
4341840 (OsC3H45)
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
4341840 (OsC3H45)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
Torus
zf-CCCH_2
TFIIA
zf-CCCH_3
zf-CCCH_RBM22
zf-CCCH_4
Motif
Other DBs
NCBI-GeneID:
4341840
NCBI-ProteinID:
NP_001408636
LinkDB
All DBs
Position
6:join(29017989..29018347,29018894..29019316,29020295..29020457,29020553..29020663,29021177..29021245,29021399..29021485,29022249..29023034)
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AA seq
665 aa
AA seq
DB search
MDDGDLSFDFEGGLDQPPAGGGGGPAPHSSDPGGVGGGGGGGGPGDGGGHGRGRGRGSYR
QTVCRHWLRGLCMKGEACGFLHQFDKARMPVCRFFRDFGECREPDCAYKHSYDDVKECNM
YKMGFCPNGPNCRYKHVKLPGPPPPVEEVLQKILQIRSFNKFNQHRHNNYNQQGERPQHP
QGSGLPNQNSIDNTTTTTAQPAVGQQAQTTNQQPPQQQQQQQQQQQQQQKPNTNDQVQSV
PNGSSNQATRIATPLPQGPSRYFIVKSCNRENLEISVQQGIWATQRSNEAKLNEAFESIE
NVILIFSINRTRNFQGCAKMTSRIGGYIGGGNWKSAHGTAHYGRNFSIQWLKLCELSFQK
THHLRNPYNDNLPVKISRDCQELEPFIGEQLASLLYLEPDSELTAILIAAEAKKEEEKAK
GVSADEAADNQDIVLFDDNEEEEEEESEEEEEGNGQESQGRGRGRGMMWPPQMPMLRGVG
PMMGGRGFPPNMIGDGFGFGGGFGMPDPFGVPRGFPPFGPRFPGDFARGGPMPGMVFPGR
PPQPGGMFPMGLEMMMGPGRGPLMGGLGMGGPGRPNRPVGMAPFMPPPPPPNNRGTKREQ
RRPGGERGDRYETTSDQGSRGHDATGNSGAEGARSQSGDRYGRSALRDDDSESDEEAAPR
RSRKR
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atggacgacggcgacctcagcttcgacttcgagggcggcctcgaccagccccccgccggc
ggcggcggcggccccgcgccgcactcgtccgaccccgggggcgtgggcgggggcggcggc
ggcggcggccccggggatggcggcgggcacggccgcggccgcggccgcggcagctaccgg
ccgacggtgtgccggcactggctccgcggcctgtgcatgaagggggaggcctgcgggttc
ctgcaccagttcgacaaggcccggatgcccgtgtgccgcttcttccgcgacttcggcgag
tgccgcgagcccgactgcgcatacaagcactcctacgacgatgtcaaggagtgcaacatg
tacaagatgggcttttgccctaatggtcctaattgccggtacaagcatgttaagctacca
gggccaccacctcctgttgaggaagttctgcagaagattttgcagattcgctctttcaat
aaattcaatcagcataggcacaataactataatcagcaaggggagagacctcaacatcca
cagggttcaggtttacctaaccaaaatagtatagataatactacaaccacaaccgctcag
cctgctgttggacagcaagcacaaactacaaatcaacagccaccacagcagcagcagcag
caacaacaacaacaacaacaacaacagaagccaaatacaaatgaccaagtccaatctgtt
ccaaatggctcgtcgaatcaagccactagaattgcaacgccccttccacaagggccatct
aggtacttcattgtcaagagttgcaatagggagaatctggagatatcagttcagcagggc
atttgggctacccaaaggagtaatgaggctaaacttaatgaagcctttgaatccattgag
aatgttattttgatattctcaatcaatagaactcgtaatttccagggttgtgcaaagatg
acttctaggattggtggctacattggtggtggaaattggaaatctgctcatggaacggca
cattatggtcggaacttctccatacaatggcttaagctctgtgaactgtcatttcagaaa
acacatcatctgcgcaatccatacaatgacaatctccccgttaagatcagccgagattgc
caggaattagaacccttcattggtgagcaattggcttcactgctttatctagaaccagac
agcgagctgacggctatactaattgcagcggaggccaagaaagaagaagaaaaggctaaa
ggagttagtgctgatgaggcagctgacaatcaagatattgtgctgtttgatgacaatgaa
gaagaggaggaagaggaaagcgaggaggaagaagagggcaatggccaagaatctcaagga
aggggaagaggaagagggatgatgtggccacctcaaatgccaatgctgcgtggtgttggg
ccaatgatgggagggcgtggcttccctcccaacatgatcggcgacggttttggttttggt
ggtggttttggtatgcctgatccttttggtgtgcctcgtggttttcctccatttggccca
agattccctggtgacttcgctagaggaggtcctatgcctggtatggtcttccccggcagg
cccccacaacctgggggcatgtttcctatggggctagaaatgatgatgggtcctggtcgt
ggaccgctaatgggaggcttgggaatgggtgggcctggacggccaaatcgacccgttggt
atggctcccttcatgcccccaccacctccaccaaataaccgtggcacgaagcgggagcaa
agaaggccaggtggtgagaggggtgacaggtatgagacaacttcagatcagggaagcagg
ggtcatgacgccactgggaattctggagcagaaggagccaggtcgcagtctggggacaga
tacggtagaagcgccctccgagacgatgacagtgagagtgacgaggaagcagcgcccagg
aggtcgcggaaacgataa
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integrated database retrieval system
