Oryza sativa japonica (Japanese rice): 4342046
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Entry
4342046 CDS
T01015
Name
(RefSeq) protein SHORT INTERNODES 1-like
KO
K27807
short internodes/stylish family transcription factor
Organism
osa
Oryza sativa japonica (Japanese rice)
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
osa03000
]
4342046
Transcription factors [BR:
osa03000
]
Eukaryotic type
Zinc finger
Other zinc fingers
4342046
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF702
Motif
Other DBs
NCBI-GeneID:
4342046
NCBI-ProteinID:
XP_015642175
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All DBs
Position
6:join(31030177..31030867,31030943..31031331)
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AA seq
359 aa
AA seq
DB search
MAGFSLRGGGGGGGGGGGVGGGGGGGRGGERGGGGDHAIGADSLFLYARGAAAAAADTAG
SGGGGGGIGFQLWHPQQQAAAAAAAVPHTSQFFSSGVATGVVLGFSSHDGGGGGGHMGGP
GGGAGGGRAGTSCQDCGNNAKKDCSHLRCRTCCRSRGFSCATHVKSTWVPAAKRRERQQQ
LAALFRGAAANNSAAAAAAAAASKRPRELVRTLGRLPSANTAMVATTTSSGEGDGRFPPE
LSVEAVFRCVRIGAVDEADAELAYQTAVSIGGHTFKGILRDHGPADEAAGQLPPSSAEYH
QLTGQGREESSPAGSSEGVGGGHGAATAATSAAVLMDPYPTPIGAFAAGTQFFPHNPRT
NT seq
1080 nt
NT seq
+upstream
nt +downstream
nt
atggcgggattctctctgaggggaggaggaggaggaggcggcggaggaggaggagtcggc
ggcggcggaggcggggggaggggaggcgaacgcggcggcggcggcgatcacgccataggg
gccgacagtctgttcctgtacgcgcgcggcgcggccgccgcggccgccgacacggcgggc
agcggcggcgggggtggggggatagggttccagctatggcacccgcagcagcaggcggcg
gccgcggccgccgccgtgccgcacacgtcgcagttcttctcctcgggcgtggccaccggc
gtcgtgctggggttctcgtcgcatgacggcggcggcggcggcgggcatatgggcggcccc
ggcggcggcgccggcggcggcagggcgggcaccagctgccaggactgcggcaacaacgcc
aagaaggattgctcccacctccggtgccgcacctgctgccggagccgcggcttcagctgc
gccacccacgtcaagagcacctgggtccccgccgccaagcgccgcgagcgccagcagcag
ctcgccgcgctcttccgcggcgccgccgccaacaacagcgccgccgctgccgccgccgcc
gccgccagcaaacgcccccgcgagctcgtccgcaccctcggccgcttgccctccgccaac
accgccatggtcgccaccaccacatcctcaggcgagggagacgggaggttcccgccggag
ctgagcgtggaggcggtgttccggtgcgtgcggatcggggcggtggacgaggcggacgcg
gagctggcgtaccagacggcggtgagcatcggcgggcacacgttcaaggggatcctccgg
gaccacgggccggcggacgaggcggcggggcagctgccgccgtcgtcggcggagtaccac
cagctgacgggtcaggggagggaggaatcgtcgccggcggggagcagcgagggcgtcggc
ggcggccacggggcggcgactgcggcgacgtccgcggcggtgctcatggacccctacccg
acgcccatcggcgccttcgctgcaggcacccagttcttccctcataaccctagaacctag
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