Oryza sativa japonica (Japanese rice): 4342102
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Entry
4342102 CDS
T01015
Name
(RefSeq) serine/arginine-rich splicing factor SR45a
KO
K12897
transformer-2 protein
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
4342102
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
osa01009
]
4342102
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
osa03041
]
4342102
Protein phosphatases and associated proteins [BR:
osa01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
4342102
Spliceosome [BR:
osa03041
]
Common components
Common spliceosomal components
SR proteins
4342102
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
RRM_5
Motif
Other DBs
NCBI-GeneID:
4342102
NCBI-ProteinID:
XP_015643798
LinkDB
All DBs
Position
6:join(31649279..31649752,31649844..31649866,31651657..31651797,31652055..31652157,31652237..31652386,31652911..31652956,31653110..31653465)
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AA seq
430 aa
AA seq
DB search
MTELAKSLGGRQPTSRSHSPAIRVPSRGIASPSSSFFLLRREAFFLLPLLFPSSHVGQGG
GGRRWHIWAVQCPNLNGPYSVWIWWAWASRVHGPTILPIAGGVYKNPKRKHQRSRLEAET
EREKQHPNPSPPLSSRTRASAPPPGAPPPPPPHPPRAMAETPERRRYSGSPSPYRGNPKS
RSRSRSPAARSQSRSPVPDPRSQARSRSRSREREPDAVNHGNTLYVTGLSSRVTERELKD
YFSKEGRVTSCHVVLEPHTRVSRGFAFVTMDTVEDAERCIKYLNQSVMEGRNITVEKSRR
GRPRTPTPGSYLGHRYDRREPRGRYRSRGGGYGRDEYYGNSYRRSPPPMYPSYRDTRDYP
PYRDTRDYSPHRDARDYYDGRGGRGYSPHRSPPYGGGRARRERSRSLPYSPYRMPERGYG
RQAGGGGYDR
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgacggagttggcgaagagcttgggcgggaggcagccgacctcgcgctcccacagcccc
gccatccgcgtcccctcccgcggcatcgcctcgccttcttcttccttcttcctcctccgc
cgcgaggccttcttcctcctccctctcctcttcccttcttcgcatgtcggccaaggggga
ggtggaaggcggtggcacatctgggccgtccaatgtcccaacctcaacggcccatattcc
gtgtggatctggtgggcctgggcctcacgcgttcacggcccaactattctccccatcgcg
ggcggcgtgtacaaaaacccaaagagaaagcatcagcggagcaggttggaagcggagacc
gagagagagaagcagcacccaaaccctagccctcccctctcctcccgcacgcgcgcgtcg
gcgccaccaccgggagctccgccgccgccgccgcctcatccgccccgtgccatggcggag
acccccgagcgcaggaggtactcagggtccccctctccttacaggggaaacccaaaatca
aggtcaagatcacgatcacctgctgctcgatcccagtctaggtctccagtccctgaccct
agatctcaggcaaggtcaagatcaagaagccgcgagagggagcctgatgctgtaaatcat
ggaaatacactgtatgtgactggactctcttctcgagtgactgaaagagaacttaaagat
tacttctctaaagaaggaagggtgactagttgccatgttgtccttgaaccccatacacgt
gtttctcgtggatttgcttttgtcaccatggacactgttgaagatgctgaacgctgtatc
aagtatcttaaccagtctgtaatggaaggccggaacatcacagttgaaaagtcacgtcga
ggtcgcccaaggacgccaactcctggaagctatcttggtcatcgatatgaccgtagagag
ccacgtgggagataccgcagcagaggaggtggctatggccgtgatgagtactacggcaat
agctaccgcaggtctccgcctccaatgtacccatcctacagggacacaagggactaccct
ccatacagggacacaagggactactccccccacagggatgctcgagattactacgacgga
aggggaggcaggggatactccccacatagatctcctccttatggcggtggcagggcccgg
agggagcgatctagatcattgccgtattctccctaccggatgcctgagagaggctatgga
cgccaagccggtggtggtggctatgacaggtaa
DBGET
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