KEGG   Oryza sativa japonica (Japanese rice): 4342138
Entry
4342138           CDS       T01015                                 
Symbol
AGO1D, OsAGO1d
Name
(RefSeq) protein argonaute 1D
  KO
K11593  eukaryotic translation initiation factor 2C
Organism
osa  Oryza sativa japonica (Japanese rice)
Brite
KEGG Orthology (KO) [BR:osa00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4342138 (AGO1D)
   03036 Chromosome and associated proteins [BR:osa03036]
    4342138 (AGO1D)
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     4342138 (AGO1D)
Chromosome and associated proteins [BR:osa03036]
 Eukaryotic type
  Gene silencing
   RISC (RNA-induced silencing complex)
    4342138 (AGO1D)
   RNA interference (RNAi) pathway
    RITS (RNA-induced transcriptional silencing) complex
     4342138 (AGO1D)
   microRNA pathway
    RISC loading complex
     4342138 (AGO1D)
SSDB
Motif
Pfam: Piwi ArgoN PAZ ArgoL1 ArgoL2 ArgoMid
Other DBs
NCBI-GeneID: 4342138
NCBI-ProteinID: NP_001389896
LinkDB
Position
6:join(31941575..31942186,31942285..31942493,31942584..31942733,31942832..31942965,31943430..31943539,31943794..31943900,31944021..31944159,31944283..31944399,31944496..31944603,31944799..31944870,31945107..31945229,31945361..31945526,31945622..31945743,31945823..31945960,31946040..31946182,31946277..31946339,31946685..31946748,31946816..31946951,31947056..31947129,31947218..31947312,31947407..31947438,31947551..31947753)
AA seq 1038 aa
MGSRRPRLPGFGEDCEPRGGGRGGGGRGRGSYYPQAQQYHPQGHGGRGGAGYYHGAAPQP
RGAMVVQQWRPATAAAEHLGHQQPYNSSVRPQHYYGPSAIAPELLQAMDAPHEPPANVSS
PEAASPEASSPRSLALEVTEQLQDLSVQYQLSESQEEIVQHVPVSTKSFKFPHRPGSGSI
GTRCLVKANHFFAQLPDKDLHQYDVSITPELTSRIRSRAVMEELVRLHKMSYLGGRLPAY
DGRKSLYTAGPLPFTSKEFRISLLEEDDGSGSERRQKTYNVVIKFAARADLHRLEQFLAG
RQAEAPQEALQVLDIVLRELPTARYAPFGRSFFSPDLGRRRSLGEGLETWRGFYQSIRPT
QMGLSLNIDMSATAFFEPLPVIDFVIQLLNTDIRSRPLSDAERVKIKKALRGVKVGVTHR
GNMRRKYRISGLTSQATRELTFPVDQGGTVKSVVQYFQETYGFAIQHTYLPCLQVGNQQR
PNYLPMEVCKIVEGQRYSKRLNQNQIRALLEETCQRPHDRERDIIQMVNHNSYHEDPYAK
EFGIKISERLALVEARILPAPRLKYNETGREKDCLPRVGQWNMMNKKMVNGGRVRSWICV
NFARNVQESVASGFCRELARMCQASGMDFALEPVLPSMYARPDQVERALKARFHDAMNIL
GPQHKELDLLIGLLPDNNGSLYGDLKRICEIDLGLVSQCCCTKQVFKMNKQILANLALKI
NVKVGGRNTVLVDAVSRRIPLVTDRPTIIFGADVTHPHPGEDSSPSIAAVVASQDWPEVT
KYAGLVSAQSHRQELIDDLYNITHDPHRGPICGGMVRELLISFKRSTGQKPQRIIFYRDG
VSEGQFYQVLLHELDAIRKACASLEANYQPQVTFIVVQKRHHTRLFAHNHNDQNSVDRSG
NILPGTVVDSKICHPTEFDFFLCSHAGIKGTSRPAHYHVLWDENNFTADALQTLTNNLCY
TYARCTRSVSIVPPAYYAHLAAFRARFYMESDSSDSGSMASGRGGGSSTSRSTRAAGGGA
VRPLPALKDSVKNVMFYC
NT seq 3117 nt   +upstreamnt  +downstreamnt
atgggatcaaggagaccaagactgcctgggtttggtgaggactgtgagcctcgtggtggt
gggagaggaggaggtggccgtggccgtggcagctactacccacaggcacagcaataccac
ccacaaggacatggtggccgtggaggagcaggctactaccatggtgctgctcctcaacct
cgcggcgcaatggtggtgcagcaatggcgtcctgctactgctgctgctgagcatttgggc
catcaacagccctacaacagcagtgtgagaccacagcactattatggtccgtctgccata
gctcccgagctgctccaagcaatggatgctccacatgagcctcctgccaatgtctcctca
ccagaagcagcctctccggaggcatcatcaccacggtctcttgctcttgaggtcacagag
cagcttcaggacttgtctgtgcagtaccaattaagtgagagccaggaagagattgtccaa
catgttcctgtgtccaccaaatcatttaaatttcctcaccgccctggaagtgggagtatt
ggaaccagatgtttagtgaaggcgaatcacttctttgctcaactgccagacaaggatctt
catcagtatgacgtttcaatcaccccggagcttacatcacgaattcggagccgtgctgtg
atggaagagttggtgagactgcacaagatgtcatacttgggaggacgtcttccagcctat
gatggtaggaagagcctttacacggccggtccattgccgtttacttcaaaagaatttcgc
atctctttgcttgaggaagatgatggttctggttcggagaggcgtcagaaaacatataac
gtggtgattaagtttgctgcaagagctgatcttcaccgtcttgagcaatttctagctgga
aggcaggcagaggctccccaggaggccttgcaagttcttgatattgtcttgcgagagttg
ccaacagcaagatatgcaccctttggtcgatccttcttctctcctgacctggggaggaga
cgatccctcggtgagggactagaaacctggcgtgggttttatcagagcattcgtcctact
caaatgggcttgtcactgaatattgatatgtcggcaactgctttctttgagccgttacca
gtcatagattttgtcatacagcttttaaatactgacatccgctcgaggcccttatcagat
gctgagcgtgtcaagatcaagaaggccttaagaggagtgaaggtaggagttactcaccgt
ggcaacatgcgccggaagtatcggatatctggtttgacatctcaggcaactcgggaactg
acttttcctgttgatcaaggaggcacagtgaaatctgttgtacaatattttcaagagaca
tatggatttgcgatccagcatacctatcttccttgtctgcaagttggcaatcagcagcgt
ccaaattacctaccaatggaggtctgcaaaatagtggaaggacagaggtactccaagaga
ctgaaccagaatcagataagggctcttttagaggagacatgtcagcgcccacacgatagg
gagcgtgacataattcagatggtgaatcacaactcctaccatgaagatccttatgcaaag
gagtttggcattaagatcagcgagcgtctggccttggttgaggcacggattttacctgcc
cctcggctcaagtataatgagactggcagagagaaggattgcttgcctagagttggtcag
tggaatatgatgaacaagaaaatggtaaatggtggtagagtcaggagctggatatgtgtc
aattttgctcgaaatgtgcaagagagtgttgctagtggattttgtcgtgaactggcccgc
atgtgccaggcctcaggaatggactttgctttggagcctgttcttccatctatgtatgca
cgtcctgatcaagtggaacgagctctgaaagccaggttccatgatgcaatgaacatactt
gggccacagcacaaggagctcgatttacttatcggactgcttcctgataacaatggttct
ctttatggtgatttgaagcgtatatgcgaaattgaccttggattggtttcccagtgctgt
tgcacaaagcaagtgtttaaaatgaacaaacaaatcctagcaaatcttgctctgaagata
aatgtgaaggttgggggaaggaacactgtactggttgatgcagtgtcgagacgcattccg
ttggtaactgacaggcctactattatattcggtgctgatgtcacccatcctcaccctggc
gaagatagcagcccatccattgctgctgttgtggcctcccaagattggcctgaagtgaca
aagtatgctggtttagtttctgctcaatctcacagacaagagttaatagatgatctgtat
aacatcacgcatgatcctcatagagggcccatctgcggtggaatggtcagggaacttctt
atatccttcaaaagatcaactggtcaaaagcctcaacggataatattctatagggatggt
gttagtgaagggcaattttaccaggttctattgcatgagcttgatgcaatccgaaaggct
tgtgcatcactcgaagcaaattaccaaccgcaggtgactttcattgtggttcagaagcgc
caccacacgagattatttgcacacaaccacaatgatcagaattcagtcgacaggagtggg
aacatattgcctggtactgttgttgactccaagatttgccatcctacggagtttgacttc
ttcttgtgcagccatgctggaatcaagggcacaagccgtcccgctcattaccacgtcctg
tgggatgaaaacaacttcacagctgatgcgttgcagaccctcaccaacaacctctgttac
acttatgcgaggtgcacacgatccgtatctattgttccaccagcatactatgctcatctg
gcggcgttcagagcccgtttctacatggagtcagatagctcggacagtggttcaatggcg
agtggtcgtggaggaggttcgtctacatcgcgcagcactcgtgctgcaggtggtggagcc
gtcaggccccttcctgcactcaaggacagcgtcaagaatgtcatgttctactgttag

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