Oryza sativa japonica (Japanese rice): 4342372
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Entry
4342372 CDS
T01015
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp31 homolog
KO
K12844
U4/U6 small nuclear ribonucleoprotein PRP31
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
4342372
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
osa03041
]
4342372
Spliceosome [BR:
osa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
4342372
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nop
Prp31_C
Motif
Other DBs
NCBI-GeneID:
4342372
NCBI-ProteinID:
XP_015646724
UniProt:
Q0D8P4
A0A0P0X2D7
LinkDB
All DBs
Position
7:join(2156200..2156202,2156329..2156391,2156479..2156616,2157042..2157934,2158091..2158161,2158288..2158390,2159173..2159248,2160026..2160133)
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AA seq
484 aa
AA seq
DB search
MASLADSFLADLDELSDNEAYPEEENAEAVGMDEDGGEDMLDLESLNYDDLDSVSKLQKT
QCYNDIMQKVEDALQKGTDFSNQGSILEEDPEYQLIVDFNALSVDIENEIIIIHNFIRDK
YRLKFPELESLVHHPIDYARVVQKIGNEIDLTLVDLEGLLPSAIIMVVSVTASTTNGKPL
SEENLAKTIEACERALTLDAAKKKVLDFVESRMGRIAPNLSAIVGSAVASKLMGTAGGLG
ALAKMPACNVQLLGAKKKNLAGFSSATSQFRVGYLEQTEVFQSTPPALRTSACRLIAAKS
TLAARINSIRGDPTGKAGRNLLEEIRKKIEKWQEPPPAKLPKPLPVPDSEPKKKRGGRRL
RKMKERYAQTDMMKLANRMQFGVPEESSLGDGLGEGYGMLGQAGSGKLRVSAAQSKLAAK
VAKKFKEKSYGSSGATSGLTSSLAFTPVQGIELSNPQSHGNLLGSGTQSTYFSETGTFSK
IKRN
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atggcaagccttgctgattctttcttagcagatcttgatgaactgtcagacaatgaagcc
tatcctgaagaagaaaatgctgaggcagtgggtatggatgaggatggcggtgaagatatg
cttgaccttgagtctcttaattatgatgatcttgacagtgtctcaaagctgcagaagaca
cagtgttataatgacataatgcagaaagttgaggatgcacttcagaaaggcacagacttc
tccaatcaagggtccatcttggaggaggatccagaataccagcttattgttgatttcaat
gctttgtcagtagatattgagaatgaaatcattataatacataatttcatacgcgacaag
tatagactgaagtttcctgaactggaatcccttgttcatcatcctattgactatgcccgt
gttgttcagaagattggaaatgagattgatttgacactcgtagacctggaagggctttta
ccttctgcaattataatggttgtgtcagtgacagcatcaacaactaacgggaagcctctt
tctgaggagaatctggcaaaaaccattgaagcatgtgagagagcccttactcttgatgct
gcaaagaagaaggtgcttgattttgtcgagagcagaatgggtcgcattgcaccaaacctt
tctgctattgttggcagcgctgttgcctcaaaactaatgggaactgctggtggtttggga
gcacttgcaaaaatgcctgcttgcaatgttcagttacttggggcaaagaagaagaatctt
gctggattttctagtgccacatctcagtttcgtgttggctatcttgaacaaactgaagta
tttcagagcacacctccagctctgagaactagtgcttgcagacttatagctgcaaaatca
actctagctgcaagaatcaattcaatcagaggtgatccaactggaaaagctggccggaac
ttgttagaagaaattcgtaagaagattgagaagtggcaagaaccgcctcctgcaaagctt
ccaaaaccacttcctgttccagactctgagcctaaaaagaagagaggaggccgtcggctt
cggaaaatgaaagaaagatatgcgcagactgacatgatgaagcttgcgaaccgaatgcag
tttggggtaccagaagaaagctcattaggtgatggcttgggggaaggctatggcatgctt
ggacaggcaggaagcgggaaactacgtgtatcagctgcgcaaagcaaacttgctgctaaa
gtggccaaaaaattcaaggagaagagctatggtagcagtggtgcaacatctggactgacg
tctagtttggcctttacaccagttcagggaatagaactatcaaatccccagtcccatggg
aacctgctaggcagtggaacacaaagcacttacttttctgagactggaacattttcaaag
atcaagaggaactga
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integrated database retrieval system
