KEGG   Oryza sativa japonica (Japanese rice): 4342472
Entry
4342472           CDS       T01015                                 
Name
(RefSeq) histone deacetylase 15
  KO
K11407  histone deacetylase 6 [EC:3.5.1.98]
Organism
osa  Oryza sativa japonica (Japanese rice)
Brite
KEGG Orthology (KO) [BR:osa00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:osa01009]
    4342472
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4342472
   04131 Membrane trafficking [BR:osa04131]
    4342472
   03036 Chromosome and associated proteins [BR:osa03036]
    4342472
Enzymes [BR:osa01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     4342472
Protein phosphatases and associated proteins [BR:osa01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     4342472
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Stress granule specific factors
     4342472
Membrane trafficking [BR:osa04131]
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    4342472
Chromosome and associated proteins [BR:osa03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class II HDACs
     4342472
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 4342472
NCBI-ProteinID: XP_015647003
UniProt: A3BGV4 Q0D8F2
LinkDB
Position
7:complement(join(3496314..3496480,3497569..3497737,3498234..3498279,3498566..3498648,3499290..3499369,3500215..3500323,3500562..3500630,3500769..3500819,3500954..3501079,3501207..3501330,3501512..3501567,3501685..3501749,3502333..3502408,3502945..3503003,3503170..3503260,3503385..3503885))
AA seq 623 aa
MASDMRSLNSQKGQSCGVSDQACHSKSKSGNDGKPSHAKANGVSSLSGSHNDEKILKENS
GACNLNSDHANPLSVDGTKVSTARSELIDSSGHDGCLHVKNESCMACDDLLQESDKEQPG
GTLEDLFSFNDEEDDDSDWEPSARLALSRWFCLNCTVPNMEGFTHCQNCDELKGSVVVGY
DAFKAHLAQAALLSADAALPSVSTAVGFDERMLLHSEIEIKPNPHPERPDRLRAIAASLA
AAGIFPSKCVMVPPREITKEELLRVHTSDHIDSVEQTKNMLYSYFTSDTYANGHSACAAK
LAAGICADLANLIVSGRVRNGFAMVRPPGHHAGVKQAMGFCLHNNAAVAALAAQRAGAKK
VLIVDWDVHHGNGTQEIFDGDNSVLYISLHRHEDGSFYPGTGAANEVGVMDGQGFSVNIP
WSRGGVGDNDYIFAFKHVVLPIAAEFAPDITIISAGFDAARGDPLGCCDVTPAGYSRMAS
MLTACSQGKLLVILEGGYNLRSISSSATEVVKVLLGDSPVYDTDATEPSEEGIQTVLQVL
SIQQQFWPVLVPSFASVLALQRSVFSRYTTEVNKMKRKHAGGAGPFWWKWGSKRLLYEVL
FEGRCLRKTKDTGKEKLNDEAEP
NT seq 1872 nt   +upstreamnt  +downstreamnt
atggcgtctgatatgaggtcactcaacagccaaaagggacagagttgtggagtttcagac
caagcttgccacagcaaaagcaaaagcggcaatgatggaaaaccatcacatgctaaagca
aatggagtttcctcgttgagcgggagtcataatgatgagaaaattttgaaagagaactct
ggagcatgcaatttaaattccgaccatgccaatcctttatcagtagatgggaccaaagtt
tctacagcaaggtcggaacttattgacagttcaggccatgatggttgtctgcatgtcaag
aatgaaagctgtatggcttgtgatgatctgcttcaagagtctgacaaagaacagcctggg
ggtacactggaggatctattttcctttaatgatgaagaggatgatgacagtgactgggaa
ccctctgctcgccttgctttgagcaggtggttttgcttgaactgtacagtgccaaacatg
gaggggtttacacattgtcagaattgcgatgagcttaagggatctgtggtagttggatat
gatgctttcaaagctcatcttgcacaggcagctttgttatctgctgacgcagcgctgcca
tcagtatctacagctgtcggttttgatgaaagaatgttgctccatagtgagatagagatt
aaaccaaatccacatccagaaaggcctgaccgccttcgtgcaatcgctgccagtcttgct
gctgcaggtatcttcccttcaaaatgtgtcatggtacctcctcgagaaatcactaaggaa
gaactcctaagggtccatacttcagatcacattgacagtgttgagcagacaaagaacatg
ctttacagttacttcacttcagatacctatgcaaatggacactcagcatgtgctgccaaa
cttgcagcagggatatgtgctgatcttgctaacttgatagtatctgggcgtgttcgcaat
ggatttgcaatggtgagacctcctggccatcatgcaggggtgaaacaagccatgggtttt
tgtcttcacaataatgcagcagtggctgcattagctgcacaaagagctggtgccaagaaa
gtcttaatagttgactgggatgtccaccatggcaatggaacacaggagatatttgatggg
gacaattctgtcttgtacatatcattacatcggcatgaggatggaagcttctaccctgga
actggggcagcaaatgaggtgggagttatggatggccaaggattctcagtcaatatacct
tggagccgtggtggtgttggagacaatgactacatatttgcttttaagcatgtggtgctt
ccgatagctgcagaatttgctccagacatcaccatcatatctgcaggatttgatgcagcg
aggggtgaccctctgggttgttgtgatgtcacacctgctggatattctaggatggcgtcc
atgctaactgcttgttcacagggaaaattgttggttatacttgagggaggatacaatctt
cggtctatatcctcatcagctactgaagttgttaaggtcctacttggggatagtcctgtt
tatgatacagatgcaactgaaccatcagaggagggcatacagactgtcttacaagtcctg
agtatccagcagcaattttggccagttttagttccatcctttgcatcagttctggcactg
cagcggtcggttttttccagatataccactgaagtaaacaagatgaaaaggaagcatgca
ggaggggcaggacccttctggtggaaatgggggagtaaaaggctactgtacgaagtgcta
tttgagggccgctgtctgaggaaaaccaaggatacaggcaaagaaaaattgaatgatgaa
gcagagccctaa

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