Oryza sativa japonica (Japanese rice): 4342517
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Entry
4342517 CDS
T01015
Name
(RefSeq) DNA-directed RNA polymerases II, IV and V subunit 11 isoform X2
KO
K03008
DNA-directed RNA polymerase II subunit RPB11
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03020
RNA polymerase
osa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
4342517
09124 Replication and repair
03420 Nucleotide excision repair
4342517
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
osa03021
]
4342517
03400 DNA repair and recombination proteins [BR:
osa03400
]
4342517
Transcription machinery [BR:
osa03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
4342517
DNA repair and recombination proteins [BR:
osa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
4342517
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_L_2
RNA_pol_L
HBM
SIR2_2
Motif
Other DBs
NCBI-GeneID:
4342517
NCBI-ProteinID:
XP_015645140
UniProt:
Q6ZA50
Q0D8B1
LinkDB
All DBs
Position
7:complement(join(3874443..3874487,3874842..3874937,3875018..3875096,3875182..3875271,3877076..3877128))
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AA seq
120 aa
AA seq
DB search
MNAPDRYERFVVPEGTKKVSYERDTKIVNAGSFTIEREDHTIGNILRMQLHRDPNVLFAG
YKLPHPLQYKILVRVHTANQSTPTQAYTQAINDLDKELENLKQAFEDEKIRYEERPKQGY
NT seq
363 nt
NT seq
+upstream
nt +downstream
nt
atgaatgctcccgaccgctacgaacgctttgtggtgcctgagggaaccaagaaggtatca
tatgagcgggatacaaagattgtgaatgctgggtcattcacaattgagcgtgaggaccac
accattggcaacatcctccgcatgcagctccacagggacccaaacgtcctctttgctggt
tataagctccctcatccccttcagtacaagatccttgtcagggtccatactgcaaaccag
tccacccctactcaagcgtacacacaggcaatcaatgatttagacaaggagcttgagaat
ctcaagcaagcttttgaggatgagaagatccgctacgaggaaaggcctaagcagggatac
tag
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