KEGG   Oryza sativa japonica (Japanese rice): 4342682
Entry
4342682           CDS       T01015                                 
Name
(RefSeq) transcription initiation factor TFIID subunit 5 isoform X2
  KO
K03130  transcription initiation factor TFIID subunit 5
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    4342682
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:osa03021]
    4342682
   03036 Chromosome and associated proteins [BR:osa03036]
    4342682
Transcription machinery [BR:osa03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     4342682
   Coactivators
    SAGA/TFTC/STAGA complex
     4342682
Chromosome and associated proteins [BR:osa03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    PCAF complex
     4342682
    STAGA complex
     4342682
    TFTC complex
     4342682
    SAGA complex
     4342682
    SLIK complex
     4342682
SSDB
Motif
Pfam: WD40 WD40_Prp19 TFIID_NTD2 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_TEP1_2nd Beta-prop_EML_2 WD40_MABP1-WDR62_2nd WDR55 Beta-prop_WDR90_POC16_2nd ANAPC4_WD40 Beta-prop_IFT122_1st NBCH_WD40 Beta-prop_TEP1_C Beta-prop_EML WD40_MABP1-WDR62_1st WDR90_beta-prop_4th Beta-prop_RIG_2nd Beta-prop_SCAP Beta-prop_IFT140_1st Beta-prop_WDR75_1st Beta-prop_DCAF4 Beta-prop_WDR19_1st Beta-prop_EIPR1 Beta-prop_Vps41 WD40_RFWD3 Beta-prop_SPT8 Beta-prop_HPS5 Beta-prop_WDR35_TULP_N Beta-prop_Nup120_160 Beta-prop_IP5PC_F RecX_HTH3 WD_LRWD1 Cytochrom_D1 WD40_like Beta-prop_VPS8 WEF-hand VPS8_N
Other DBs
NCBI-GeneID: 4342682
NCBI-ProteinID: XP_015646527
LinkDB
Position
7:join(5735995..5736164,5736723..5736804,5737325..5737403,5737521..5737612,5737740..5737796,5737964..5738051,5738168..5738277,5738468..5738566,5738952..5739103,5740354..5740464,5740549..5740618,5740710..5740749,5741099..5741263,5741363..5741439,5741718..5741834,5741969..5742234,5743203..5743298,5743377..5743452,5743550..5743603)
AA seq 666 aa
MEDEEMEKKVHQYLQRKGFRVAGLALLEDRTRLSATTTTTTTASSSSHSLSDAALSRSEN
DPARYYDGYSKLRTWAYSYLDHYKHELLRILYPLFFHCFMDLVAEGHTQEACSFFHTFRE
DHEHSRDLKKLESILSPLHLEQMEVARSLRQNKFRIKLCEYSYELLLQYLHKTQALVVLG
IINERIDFQVSPGQSPLIIDDSDAVVLIGTSKDLTKQINQKEVHWGILEDSLEERMEKAI
SDSDKTEIESKDADTEDNKKRSSEGGKQGGSHKKIKKDKFVGTTGKNMKSETSMVSIAPR
VKPELTLPMTSVEVEQSILEDLRNRAQLNSLSLPSVSFYTFLNTHNGLNCSSISHDGSLV
VGGFADSSVKVWDMSKIGQPSKASCSQGENGPSQIERVSTSDEARKSCTLFQGHSGPVYS
AMFSPIGDFLLSSSADSTIRLWNTKLNANLVCYKGHNYPVWDVQFSPVGHYFASASHDRT
ARIWSMDKIQPLRIMAGHLSDVDCVQWHVNCNYIATGSSDKTVRLWDVQTGECIRMFIGH
RSMVLSLAMSPDGRYMASGDEDGTIMMWDISSGRCVSPLVGHNSCVWSLAYSCEGALLAS
GSADCTVKLWDVASSTKTLKMDDTKGGSANRLRMLKALPTKSTPVYTLQFSRRNLLFAAG
APSLGS
NT seq 2001 nt   +upstreamnt  +downstreamnt
atggaggacgaggagatggagaagaaggtgcaccagtacctgcagcggaagggcttccgc
gtggcggggctcgcgctgctcgaggaccgcacccgcctctccgccaccaccaccaccacc
accaccgcctcctcctcctcccactccctctccgacgccgcgctctccaggtcagaaaac
gatccagcgaggtactatgatggctatagtaaactaagaacatgggcatacagttatctt
gatcactacaagcatgaattactccgcattctttatccactatttttccactgcttcatg
gatttagtggcagagggacatacacaggaagcttgctcatttttccacacatttcgtgaa
gaccatgaacactcgagggatctcaagaagctggaaagcatcctttctcctttacatttg
gaacaaatggaagtggctcgatctttaaggcagaataaattcagaattaagctatgtgag
tattcatatgaattgcttctccagtatctccacaaaacacaagctcttgtggtgcttgga
ataatcaatgaacgcatagattttcaagtatcccctgggcagtctccattaatcattgat
gactcggatgctgttgttctgattggaactagcaaggacttgacaaaacagataaatcag
aaggaggtgcattgggggatacttgaagattcacttgaagaacgtatggagaaggcaatt
tcagattctgataaaactgaaatagaaagcaaggatgcagacacagaagacaacaagaaa
agatcctcagaaggtggaaagcagggtggctcacataaaaagatcaaaaaggacaagttt
gtaggaaccacagggaaaaacatgaaatctgaaactagcatggtttctatagcaccacga
gttaaaccagagctaacgcttccaatgacgtctgttgaagttgagcagtcaattcttgag
gacttgcgaaaccgtgcacaattgaatagcttgtcattgccatctgttagcttctataca
ttccttaatacacataatgggttaaattgctcatcgatttcgcatgatggttcattggtc
gttggtggattcgctgattcatcagtgaaggtttgggatatgtcaaagattggccagcct
tccaaagcatcttgttcacaaggcgagaatggaccctcccagattgagcgggtatcgaca
tcagatgaagcgcgtaaatcctgtacattattccaaggtcattctggaccagtttattct
gccatgtttagcccaattggggacttcctcttgtcatcatctgcagactcaacaattcgc
ttatggaacaccaagttgaatgctaatcttgtttgctacaaaggacacaactaccctgtt
tgggatgtccaatttagtccagttggacattactttgctagtgcttcgcatgacaggact
gctagaatctggtccatggataaaatccagcctttgagaataatggctgggcatttatct
gatgttgattgtgtgcaatggcatgtcaactgcaactacattgccactggctctagtgac
aaaacagtaagactatgggatgttcaaacaggtgaatgtataaggatgtttattggccat
aggagtatggttttatcattggcaatgtctcctgatgggcgatacatggcctctggagat
gaagatggaacaatcatgatgtgggatatatcttctggtcgttgtgtttcaccgctagtg
ggacataactcttgtgtgtggtcgcttgcttacagctgtgaaggggcattacttgcatct
ggatcagccgactgcactgtaaaactatgggatgtcgcctccagcactaagactcttaag
atggatgataccaaaggtggttcagctaaccgactgaggatgctgaaagccctccctaca
aaatcaacccctgtttacactctgcagttttctcggaggaatcttttatttgcggctggt
gctccctcacttggctcctaa

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