Oryza sativa japonica (Japanese rice): 4342769
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Entry
4342769 CDS
T01015
Name
(RefSeq) transcription elongation factor TFIIS
KO
K03145
transcription elongation factor S-II
Organism
osa
Oryza sativa japonica (Japanese rice)
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
osa03021
]
4342769
Transcription machinery [BR:
osa03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
4342769
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TFIIS_M
Zn_ribbon_TFIIS
Med26
HVO_0758
Motif
Other DBs
NCBI-GeneID:
4342769
NCBI-ProteinID:
NP_001408995
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Position
7:complement(join(7304458..7305399,7307525..7307722))
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AA seq
379 aa
AA seq
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MGAAGAMERELLEAFEAARKAADAVGEAAAAAGAGEGESPEAARCVDALRRLRGARVTTA
ALVSTQIGRRIRYLTKHPHSSIKATASDLLGHWKKVVIEEDKKNGALQNGKSSSTVVKVE
KVEPMKVEKASPRATVNNNNMDTRVVNHKGGKVEKFSNAELRTQSIKVEKVQKVVHKVSS
VEKPSPVQGGPPRLTSVVKCGDASRDRIRAILGDAFSRVSEETRKDDREEVRNIIEEVKA
CDPFRIAVMVECALFQKLGNFNGPNKQRYRSLMFNLKDDHNTDFRRRVLLGQVQPERIAD
LTPTEMASDTRKLENKKIEEKALFECERGGAPKATTDQFKCGRCGQRKTTYYQLQTRSAD
EPMTTFVTCVNCNNHWKFC
NT seq
1140 nt
NT seq
+upstream
nt +downstream
nt
atgggcgcggcgggggcgatggagagggagctcctggaggcgttcgaggcggcgaggaag
gcggcggacgcggtcggggaggcggcggcggcggccggggccggggaaggggagtcgccg
gaggccgcgcgctgcgtcgacgcgctgcggaggctgcgcggggctcgcgtcaccaccgcc
gccctcgtctccactcagatcggcagacgtattcgctatctcaccaagcatcctcactca
agcataaaagcaacagcttcagacctgttaggacactggaaaaaggttgtcattgaagaa
gacaagaaaaatggggcactgcagaatggaaaatcgagttctactgtggtaaaggttgag
aaggtggagcctatgaaagttgaaaaggcatcaccaagggctactgtcaataataataat
atggataccagagttgtgaaccacaaaggtggaaaggttgagaagttttctaatgctgag
ctgagaacccaatctatcaaggttgagaaagtacaaaaggtagttcacaaagtatcttct
gttgagaagccgtctcctgtccaaggtggtcctccaagactgacatccgttgttaaatgt
ggtgatgctagtcgagacagaattcgggcgatacttggtgatgccttctccagagtttct
gaagagactagaaaggatgacagggaggaagtgaggaacatcatagaagaagtaaaagca
tgtgacccattcaggattgctgtgatggtagagtgtgccttgtttcagaagctggggaat
tttaatggacctaataagcaaaggtacagatcattgatgttcaatctgaaggatgatcac
aacacagacttccggagaagggttcttctaggacaagtgcagcctgagagaattgctgac
ctaaccccgacagaaatggctagcgacaccaggaagcttgagaacaagaagatcgaggag
aaggctctgttcgagtgcgagcgtggaggagcaccgaaggccaccactgatcagttcaag
tgtggcaggtgcggccagcgcaagactacctactaccagctccagactcggagcgccgac
gagccgatgacgacgttcgtgacctgcgtgaactgcaacaatcactggaagttctgctaa
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