KEGG   Oryza sativa japonica (Japanese rice): 4343217
Entry
4343217           CDS       T01015                                 
Name
(RefSeq) protein CTR9 homolog
  KO
K15176  RNA polymerase-associated protein CTR9
Organism
osa  Oryza sativa japonica (Japanese rice)
Brite
KEGG Orthology (KO) [BR:osa00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:osa03021]
    4343217
Transcription machinery [BR:osa03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    PAF1 complex
     4343217
SSDB
Motif
Pfam: TPR_1 TPR_2 TPR_12 TPR_8 TPR_14 TPR_19 TPR_11 TPR_17 TPR_16 TPR_CcmH_CycH TPR_6 TPR_7 TPR_9 ANAPC3 RPN7 Fis1_TPR_C TPR_10 ARM_TT21_5th DUF1780
Other DBs
NCBI-GeneID: 4343217
NCBI-ProteinID: XP_015647367
UniProt: Q8H9E4
LinkDB
Position
7:complement(join(17396374..17396490,17396756..17397052,17398082..17398153,17398238..17398504,17398807..17399031,17399125..17399232,17399315..17399416,17400226..17400321,17400831..17400992,17401062..17401142,17401958..17402215,17402294..17402386,17402595..17402663,17403948..17404040,17404120..17404220,17405392..17405476,17405608..17405822,17405900..17405963,17406046..17406162,17406249..17406335,17408043..17408143,17409327..17409518,17409654..17409720,17410332..17410472))
AA seq 1069 aa
MASVYIPVQGTEEEVRVALDQLPADASDILDILKAEQAPLHLWLIIAREYFKQGKIEQFR
QILEEGSGPEIDEYYADVKYERIAILNALGAFHTFLGKVERAQQKEVHFKEATQCYNRAS
RIDETEPSTWIGRGQLCVVKHDLQMASDSFKIVLDEDGSNFPALLGQASVYFLMGDSEQQ
HKKALDYYRNSLDLYKRALRAYTSCPAAVRLGIAFCRYKLGQSDKARQAFQRVLQLDPEN
IDALVALAIMDLQTNEAGGIRRGMEKMRRAFEIYPYCTLALNHLANHYFFTGQHFVVEQL
TETALSSSNHGLLKSHAFYNLARSYHSKGDIETAGRYYMASVNEISKPQDFVLPFFGLGQ
IQLKFADYKSSLASFEKVLEVHPENCESLKAIGHIYAKSGENDKAIETFKKVTRIDPKDH
QAFMELGELLVQSDWATAMEYLKTARNLLKKAGEKIPIELLNGIGLLHFEKGELEMAEQS
FKEALGDGFWVSIIDGSVGSSVVNWSIQYRDQSFFQQLEEEGTPLELPWDKVTTLFNYAR
LFEELHDTVKASLFYRLIIFKYPDYIDTYLRLAAIAKEKNNLQLSIELIGDALKIDDKYP
NALSMLGSLELQGDETWLTAKEHFREAKDASEGKDTYSMLQLGNWNYFAANRPEKKAPKF
EATHREKAKELYSNVLKQHHGNMFAANGIGILYAEKAQWDIAKELFTQVHEAASGSIFVQ
MPDVWINLAHIYFAQGFFQQAVKMYQNCLRKFFYNTDATILLYLARTHYEAEQWQDCRKT
LLRAIHLAPSNYLLRFNVGVSMQKFSASTLQKTKRTVDEVRATVSELQNAIRVFSLLSVA
STYHSHGFDERKIETHIEYCKHLLDAAKVHRDAAEQAEQQNKQKMEVARQIALADEARRK
AEEQRKAQLERRKQEDELKQVMQQEQHFERVKEQWKTSSNTPGKRKDRSKHEDEEGGGEK
RRKKGGRRRKDQKTKAHYGEEEEDEYRDEPEAEDDYANTARSNDGGDSEKAPGHLLAAAG
LEDSDAEEDDMGHPQSAIERKRRAWSESEDDEPVQRPVQPSAGENDLSD
NT seq 3210 nt   +upstreamnt  +downstreamnt
atggctagcgtatacatcccggtgcaggggacggaggaggaggtgcgggtggcgctggac
cagctccccgccgacgcctccgacatcctcgacatcctcaaggccgagcaggccccgctc
cacctctggctcatcatcgcgagagaatacttcaagcaaggaaagatagaacagttccga
cagattctagaggaaggatcagggccagaaattgatgaatattatgctgatgtgaaatat
gagagaatagctatccttaatgctttgggcgctttccatactttcctggggaaggttgag
agagcacaacagaaggaagtccatttcaaagaagcaactcaatgctacaatagggcatca
aggatagatgaaactgaaccttcaacatggatcggaagaggtcaactctgtgtggtcaag
cacgatttgcaaatggcatctgattcattcaagattgtattggatgaagatggaagcaat
tttccagctttacttggtcaggcctctgtttatttcctgatgggtgactcagagcagcaa
cacaagaaagctctggactattataggaactcactggatctctataagagagccctgcgg
gcctataccagctgtcctgctgctgtaaggcttggtatagcattttgccgatacaaactt
ggtcagtcagataaagctcgacaagcttttcaacgcgttctgcagttggaccctgaaaat
attgatgctttagtagcactggcaatcatggacttgcaaacaaatgaagctggtggaatt
cgcagaggaatggagaaaatgagaagagcttttgaaatttatccttattgcacattggca
ctcaaccacctagcaaaccattatttctttactggccagcattttgtggttgaacaactg
acggagactgctctctcttcaagtaatcatggactgctgaaatcacatgctttctataac
ttagccagatcgtaccacagtaagggtgatattgagactgctggaaggtattatatggca
tctgtcaatgaaatcagtaagccacaggactttgtgttgccattctttggacttggtcag
atacaattaaaatttgcagactacaaaagttcattagctagctttgagaaagtgttggag
gtgcacccagaaaattgtgaaagtttaaaggctattgggcacatatatgcaaagtcaggt
gagaatgacaaagctatagaaaccttcaagaaggttacccggattgatccaaaagatcat
caggcatttatggagctaggtgaattattggtacaatctgattgggctactgctatggaa
tacttaaaaacagctcggaatctcctaaagaaggcaggagagaaaatacccattgaattg
ctcaatggaattggactacttcattttgagaagggagagcttgagatggctgaacaaagt
tttaaggaagcacttggagatggcttttgggtttcaattatagatggcagtgtaggtagc
tccgtggttaactggagtattcagtatagggaccagagtttttttcaacaacttgaagaa
gagggaacacctcttgaattaccttgggataaggtcactacattgtttaactatgcaaga
ttgtttgaagagctccatgatactgtgaaagccagtctcttttaccgcctcattattttc
aagtatccagactacattgatacttatcttaggttagcagctattgcaaaagaaaaaaac
aatctccaactgagcattgagctgataggtgatgctctaaagatagatgataagtatcca
aatgcactttctatgcttggaagtcttgaactccaaggtgatgaaacctggcttactgca
aaggagcatttccgtgaagctaaagatgcttctgagggaaaagacacatactctatgctt
caattggggaactggaattactttgctgctaatcgccctgagaaaaaggccccaaaattt
gaggccactcatagggagaaagccaaggaactgtattcaaatgtactaaagcagcaccat
ggtaatatgtttgctgcaaatggtattgggatcttatatgctgagaaagcccaatgggat
attgccaaggagttatttacacaggtacatgaagctgcttcaggaagtatatttgtccag
atgcctgatgtttggataaatttggctcatatatattttgctcaaggtttttttcagcaa
gctgtgaaaatgtaccaaaactgcctgcggaagttcttctacaacacagatgcaactata
cttctatatcttgcccggacacactatgaagctgaacaatggcaagactgcaggaaaaca
ttgctgagagctattcatttggctccatcaaattatttattgcgattcaatgtaggtgtt
tcgatgcagaaattctcagcttcaactctacagaagacaaaacgaacagttgatgaagtt
cgtgcgacggtctctgagcttcagaatgctattagagtattcagtctattgtctgttgca
tctacataccattcccatggttttgatgagagaaaaatagaaactcatattgagtactgc
aaacatttgcttgatgctgctaaggttcatcgtgatgcagctgagcaggctgagcagcag
aataagcaaaaaatggaagttgctcgacaaattgctttggctgatgaagctcgccgcaag
gctgaagaacagaggaaggcccagttagaaagaaggaagcaagaggacgagctaaagcaa
gtaatgcaacaggagcaacactttgagcgtgtcaaggagcaatggaaaacctcaagtaac
actcctggcaagagaaaagataggtctaagcatgaagatgaagaggggggaggtgaaaag
aggaggaagaagggtggtaggagaaggaaggatcagaagacaaaggcacactatggggaa
gaggaagaagacgaatatagagatgaaccagaagcagaagatgattatgcaaacacggcg
aggagtaacgatggtggcgattcagagaaagccccaggtcaccttcttgctgctgcaggt
cttgaagattctgatgctgaagaagatgacatgggacaccctcaatctgccatagaacgg
aagagacgagcctggtcagaatctgaggatgatgagccagtgcagaggccagtgcaacct
agcgcaggcgagaacgatctgagtgattga

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