KEGG   Oryza sativa japonica (Japanese rice): 4343292
Entry
4343292           CDS       T01015                                 
Name
(RefSeq) regulator of nonsense transcripts 1 homolog isoform X1
  KO
K14326  regulator of nonsense transcripts 1 [EC:5.6.2.5 5.6.2.3]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03013  Nucleocytoplasmic transport
osa03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    4343292
   03015 mRNA surveillance pathway
    4343292
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4343292
Enzymes [BR:osa01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     4343292
    5.6.2.5  RNA 5'-3' helicase
     4343292
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     4343292
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     4343292
SSDB
Motif
Pfam: UPF1_Zn_bind AAA_12 AAA_11 UPF1_1B_dom AAA_30 AAA_19 ResIII SLFN-g3_helicase DEAD UvrD-helicase NPHP3_N Helicase_RecD nSTAND3 ATPase PhoH SRP54 AAA_16 AAA_22 AAA_32 Ribosomal_S13_N AAA_25 AAA
Other DBs
NCBI-GeneID: 4343292
NCBI-ProteinID: XP_015646969
UniProt: Q69VT5
LinkDB
Position
7:join(18780599..18781207,18782112..18782363,18782470..18782640,18782796..18782846,18782971..18783063,18783228..18783323,18783421..18783471,18783555..18783673,18784012..18784120,18784494..18784616,18784693..18784764,18785066..18785137,18785228..18785294,18785363..18785505,18785597..18785668,18785735..18785863,18786420..18786575,18786682..18786795,18786894..18786992,18787077..18787154,18787505..18787639,18788184..18788258,18788350..18788464,18788561..18788931,18789006..18789068,18789152..18789223,18789388..18789516,18789615..18789731,18789813..18789893)
AA seq 1277 aa
MATQPPSSSAAADLYETASQPDPPASAAGDAYTFLEFNTQGDDFDYPDFPELSQPARSAP
PTSAPGVPGSAGSPSPSSSSWPPPPPPPPDASQDPDLAPREATTPPASSSSPSPRASAKA
RASAAAADGLASGVAALSFEEPLGAGAGEDGYDYGKGDFVEHACRYCGIHNPACVARCNV
PSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFI
SAKAENVVVLLCREPCLSVNALKDMNWDLSQWCPLIDDRCFLSWLVKVPSEQEQLRARQI
SAQQINKVEELWKTNPDASLEDLEKPGVDDEPQQVALKYEDAYQYQNVFAPLIKLEADYD
KMMKESQSKDSLTVRWDIGLNKKRIAYFVFPKEDNELRLVPGDELRLRYSGDSSHPAWQS
VGHVIKLTAQEEVALELRASQGVPVDLNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVS
GYIYHHLLGHEVEHQIIRNTLPRRFGAPGLPELNASQVLAVKSVLQKPISLIQGPPGTGK
TVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISSTGLKVVRLCAKSREAVSSPVEH
LTLHYQVRHLDTSEKSELHKLQQLKDEQGELSSSDEKKYKALKRATEREILQSADVICCT
CVGAGDPRLANFRFRQVLIDESTQATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAA
RAGLAQSLFERLVILGVKPFRLQVQYRMHPCLSDFPSNCFYEGTLQNGVTVNERQTPGID
FPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPY
EGQRAYIVNYMSRNGSLRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDP
RRLNVALTRARYGIVILGNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKP
KKIYNDRRLFLGGGQGVMQGASFGAAGTNPVADKRSGRGKGHSFVPFGPPNGAHKPGVHP
SGYPLPRMPFPPFAGAHSQPYAIPTRGSLHGPIGAVPPVPQPGNRNFGPRGNTGGPIGGH
LAHQQSSQQAMGGMGSAFNFPGLENPSSQPSGGGPMSQTGLMTQMPVQGLSQTFRDGFSI
GGMSQDFFGDDFKSQGSHVAYNIADFSTQASQGGYGVDYSQGPQSGYPGNYLNQNAHPGY
SHMGAANDIVSQDHMAHGSHGMFTQAGYNDSSQDESSQMHFGMAGPGLQSQPMMNPLYSQ
SYAHYNTQPQSLQPPPQ
NT seq 3834 nt   +upstreamnt  +downstreamnt
atggcgacgcaaccgccctcctcctccgccgccgccgacctctacgagacggcctcgcag
cccgacccgcccgcctcggccgccggcgacgcctacaccttcctcgagttcaacacccag
ggcgacgacttcgactacccggacttcccggagctctcccagccggcccgatccgcgccc
cccacgtcggctccgggggtgcctggctccgcgggctcgccgtcgccgtcgtcctcgtcg
tggccgcccccgcctcccccgccgccggacgcctcgcaggaccccgatctcgcgccgcgg
gaggccaccaccccgccggcctcctcgtcctcgccgtcgccgcgcgcgtcggccaaggcg
agggcgtccgccgcggcggcggacgggctcgcctccggggtcgcggcgctcagcttcgag
gagccgctcggcgccggcgccggggaggacgggtacgactacggcaagggcgacttcgtc
gagcacgcgtgccggtactgcgggatccacaaccccgcgtgcgtcgcgcgctgcaacgtg
ccgtcctgccgcaagtggttctgcaactcgcgggggaacacgtccggctcccacatcgtt
aaccacctggttagagcaaaacataaggaagtttgcctacacaaggatagtccgttgggt
gaaacaattcttgagtgctacaattgtggttgtcggaatgtattccttcttggttttatc
tcagcaaaggcagagaatgtcgttgttcttctgtgcagagagccctgtttgagtgttaat
gcattgaaggatatgaattgggacctcagtcagtggtgtcctcttattgatgacaggtgt
ttcttatcatggcttgtcaaggttccctcagaacaggagcagctgagggctcgtcaaatt
agtgcgcaacaaattaacaaagtggaagagctctggaaaacaaaccctgatgcctctctt
gaagatcttgaaaaaccaggtgtcgatgatgagccccaacaagtggctctgaagtatgaa
gatgcttaccagtatcaaaatgtgtttgctccactgataaagcttgaggctgattatgac
aagatgatgaaagagtcacagagcaaggacagcttgaccgtgcggtgggatattggactg
aacaagaagcgcatagcctatttcgtgtttccaaaggaagacaatgaattgagacttgtc
ccaggagatgagctgcggcttcgatattctggtgattcttcacaccctgcatggcagtct
gtgggtcatgtgattaaacttacggcacaagaggaggtagcacttgaacttcgtgctagt
cagggagttcctgttgatttgaaccatggattcagtgtggattttgtctggaagagtact
agctttgataggatgcagggggcaatgaaaacttttgctgtggatgagacaagtgtcagt
gggtacatataccatcaccttttgggacatgaagttgagcatcaaataatacgtaataca
ctaccgagacgctttggtgcaccaggacttccagaactaaatgcttcacaggtcttagca
gttaaaagtgttctccagaagccaattagtttgattcaaggtccacctggcacagggaaa
actgtcacatctgctgcgatcgtgtatcacatggcaaaacaaggccaaggacaggtcctt
gtatgtgctccaagtaatgtagccgttgatcagttggcagagaagataagctctactggt
ctcaaggttgtcaggctatgtgcaaaatctagggaagctgtttcatctcctgttgagcat
ttgacacttcattatcaggttcggcaccttgatacatctgaaaagagtgaattgcataag
ctacagcaactcaaagatgaacaaggtgaattgtcaagcagtgatgagaaaaagtacaag
gcattaaaacgagctactgagagagagatattacaaagtgctgatgtgatttgttgcact
tgtgttggtgctggagaccctcgtttagcaaacttccgattccgtcaagttcttattgat
gaatctacacaggcaacagagcctgaatgtctcattccattggtgcttggtgtaaagcag
gttgttcttgttggagatcattgtcaactgggcccagtcatcatgtgcaaaaaggcagct
cgtgcaggattagcacaatcgctctttgaacggcttgttatccttggagtcaagcctttc
aggctacaggtacaatataggatgcacccttgtctttcagacttcccgtccaactgcttc
tatgaaggcacactgcaaaatggagtaactgtaaacgagagacagacacctgggattgat
tttccttggcctgttccaaatcggcctatgttcttctacgtgcagatgggacaagaagag
atcagtgccagtgggacatcatacctcaatagaactgaagctgcaaatgttgaaaagatt
gtaactacatttttaaggagtggtgttgtaccaagccagattggagttatcacaccttat
gaaggacaaagggcatatattgtgaattatatgtcaaggaatggctctcttcgccaacaa
ctatacaaagaaattgaggtagcaagtgttgattccttccagggaagagaaaaagattac
ataatcctgtcttgtgttagaagcaatgagcaccagggtattgggtttcttaatgatcca
cgcaggttaaatgtcgcattaactcgtgctcggtacggtatagttattcttgggaaccct
aaagttctaagcaagcagccactctggaatagtttattgacacattataaggagcatgag
tgtttggtagaaggacctttgaacaacttaaagcagagtatggtgcaatttcaaaagcca
aaaaagatctacaatgatcgacgactcttcctgggtggcggtcaaggtgttatgcaagga
gctagttttggtgctgcaggcacaaacccagtggcagataagagaagtggtagggggaaa
gggcattcctttgttccatttggcccaccaaatggggctcataaacctggtgtgcaccca
tctggctatcctttacctcgtatgcctttccctccatttgctggggctcattctcaaccc
tatgctattccaacccggggatcattgcacggaccgattggagctgttccacctgtgcct
caacctggaaacagaaactttggacctcgtggaaatactggtggccctattggtgggcac
cttgctcaccaacagagttctcagcaagctatgggaggcatggggtcagcttttaacttt
cctggcctggagaatccgagcagtcagccttctggtggaggtccaatgtcccagactgga
ttgatgacacagatgcctgtccaaggtctcagtcaaacattccgcgatgggttttccatt
ggtgggatgtctcaggacttctttggagatgatttcaagagccaaggatctcatgtggca
tacaacattgctgatttttccactcaggcttctcaaggaggctatggtgttgactactct
caaggaccccaatctggatatcctgggaattatttgaaccaaaatgcacacccagggtat
tcccatatgggtgcagcaaatgacattgtctctcaggatcacatggcccatggttcacat
ggaatgtttacacaagcgggatacaatgactcttcacaagatgagtcatcacagatgcat
tttggaatggctggtcctggtcttcagtctcagcccatgatgaacccgctctactctcag
tcatatgctcattacaacacccaaccgcagtctctccaacctcctccccagtga

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