Oryza sativa japonica (Japanese rice) (RefSeq): 4343339
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Entry
4343339 CDS
T01015
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
3.6.4.13
]
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
4343339
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
osa03041
]
4343339
Enzymes [BR:
osa01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.4 Acting on acid anhydrides to facilitate cellular and subcellular movement
3.6.4.13 RNA helicase
4343339
Spliceosome [BR:
osa03041
]
Complex C
Other components
Step II factors
4343339
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HA2
OB_NTP_bind
Helicase_C
DEAD
DUF2075
AAA_30
AAA_22
AAA_19
Flavi_DEAD
AAA_24
T2SSE
ABC_tran
Sigma54_activ_2
AAA_14
AAA_7
AAA_16
AAA_33
SRP54
Motif
Other DBs
NCBI-GeneID:
4343339
NCBI-ProteinID:
XP_015647213
UniProt:
Q0D667
Q7XIR8
LinkDB
All DBs
Position
7:complement(19290923..19299106)
Genome browser
AA seq
1280 aa
AA seq
DB search
MEGDMDATMTTLGPEDDTGAQGLILPSRDRVMYRPPPGKSALGLDLLAHRKREAEGGNAF
KPPPQKVVAAATSIDEDEKPGPAESDEKSLSSGHRGSVSRRYRGANSDERTSFKEPTITD
EDGRGPSPSHRDGSYRQDTHKSRSSQGSHSRSTPRRYDDYEDRGSRDKHGERERSASIGY
SSSGRRGHHDDRESHNRRDERERSTSVDYMNKRSRHEHSSRSSRTPARSDWDSGRWEWED
TPRREYRDDRSNSHRQHPSPSPMLAAASPDARLVSPWLGGNTPRYAASPWDNVSPSPAPI
RASGSSKGSSYPRSGGRSHQLTFSSTSASNDRESDRSPSDADGNYEISEEMMQEMDYNAD
RAWYDCEEHNTMFDGDNSMYLEDDSSYKKREAQLPKRLTRKDGSLMTLAQSKKLSQMTAD
NAQWEDRQLLRSGAVRGTEVQTEFDDEDERKVILLVHDTKPPFLDGRVVFTKQAEPVMPL
KDPTSDMAIVARKGSALVREIREKQSMNKSRQRFWELAGSKLGNILGVEKTAEQVDADTA
TVGDQGEIDFKEEAKFSQHMKVKAEAVSDFAKSKSLSQQRQYLPIFTVRDDLLQVVRENQ
VVVVVGETGSGKTTQLTQYLHEDGYTTTGIVGCTQPRRVAAMSVAKRVSEEMETELGHKV
GYAIRFEDMTSPNTIIKYMTDGVLLRETLKDADLDKYRVIVMDEAHERSLNTDVLFGILK
KVVARRRDFKLIVTSATLNADKFSKFFGGVPVFHIPGRTFPVNIMFSKTPCEDYVEAAVK
QAMTIHITSGPGDILIFMTGQEEIEATCYALAERLEQLISSSTKTVPKLSILPIYSQLPA
DLQAKIFQKAEEGTRKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPRMGMDALQVFP
VSRAAADQRAGRAGRTGPGTCYRLFTESAYQNEMLPNPVPEIQRTNLGNVVLLLKSLKVE
NLLDFDFMDPPPQENILNSMYQLWVLGALNNVGALTVIGWKMVEFPLDPTLAKMLLMGEQ
LECLDEVLTIVSMLSVPSVFFRPKDRAEESDAAREKFFVPESDHLTLLNVYLQWKSNQYR
GDWCNDHFLHVKGLRKAREVRSQLLDILKTLKIPLTSCHMEWDVVRKAICSAYFHNAARL
KGVGEYVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQCVTAVDPQWLAEL
GPMFFSVKETDTSLLDHKKRQKEDKTAMEEEMEKLRQEQAEAARLEKEREREKRAKQQQQ
VSMPGLKKGSTYLRPKRMGL
NT seq
3843 nt
NT seq
+upstream
nt +downstream
nt
atggagggggacatggacgcgacgatgacaaccctggggccggaggacgacacgggcgcg
caggggctgatcctgccgagcagggatagggtcatgtaccggccgccgccggggaagtcc
gccctaggtttggacctcctcgcgcacaggaaacgggaagcagaaggcggcaatgccttc
aagccgccgcctcagaaggtagtggcagctgctacttcaatcgatgaagatgagaagccg
ggacctgcggagagtgatgagaagagcctgagcagtggccatcgtggcagtgtttctcgc
cgctatcgaggagccaactctgatgagagaacctctttcaaagaacctaccatcactgat
gaggatggaaggggtccttcacccagtcaccgagatggatcttatcgacaagatacccac
aaatctagaagttctcaaggttcccattctcgtagcactcctcgtagatatgatgactat
gaggataggggatcccgtgataaacatggagaacgggaaagatctgcatccattggctat
agtagcagtggaaggcggggacaccatgatgatagagaatcgcataataggcgtgatgaa
cgtgagagatctacatccgttgactacatgaacaagcgaagtcggcatgagcatagctca
agaagctcaagaacacctgcaagatctgattgggacagtggccgatgggaatgggaagat
acacctcgtcgggagtaccgtgatgatcgctcaaattcccatagacaacatccttcacca
tctcctatgcttgcagctgcatcccctgatgcacgcttagtgtctccttggctaggtggg
aatacgccacgttatgcagcatccccatgggataacgtatctccatcacctgcaccaatt
cgcgcttctggttcatcaaaagggtcttcttatccacgttctggtggaagatcccaccag
cttactttttcgtctacatctgcatcaaatgacagggaatctgatagaagcccctcagat
gccgatggcaactatgagatatctgaagaaatgatgcaggagatggattataatgctgat
cgtgcgtggtatgattgtgaagaacacaacaccatgtttgatggtgataattctatgtat
cttgaagatgatagttcctacaaaaagagggaagcacaattaccaaagcggctgactcgt
aaagatggcagtctgatgacccttgctcagagcaagaagttatcacagatgactgctgat
aatgctcaatgggaggatagacagttgttgagatctggagctgtcagaggaacagaggtg
cagacagaatttgatgatgaggacgaaaggaaagtaatacttcttgttcatgacacaaaa
cccccattcctggatgggcgagttgtattcacaaaacaagcagaacctgtaatgccactg
aaggacccaacctccgatatggcaatagttgcacgcaaaggttctgctttggtcagggaa
attcgtgaaaaacagagcatgaataagtcacgccaacgcttttgggagctcgctggatct
aagcttggaaatattttgggtgttgagaaaacggctgaacaggttgatgcagatactgct
actgttggtgaccaaggtgagattgattttaaagaggaagcaaaattttcacagcacatg
aaggtaaaagcagaagctgttagcgactttgcaaaatcaaaatctctttctcaacagagg
caatatcttccgatatttactgtacgggatgacttgctacaggttgtgcgtgaaaatcaa
gtagttgtggtggttggtgaaactggctctgggaagactacccagctgactcagtatctg
catgaggatggatataccaccaccggcattgttggctgtactcaacctagacgtgtggct
gccatgagtgttgctaaaagagttagtgaagaaatggagactgagttgggacataaagtt
ggatatgcaattcgatttgaggacatgactagtcccaacactataataaagtatatgaca
gatggagtgctgcttcgggaaaccttgaaagatgctgaccttgacaaatatcgtgttatt
gtcatggatgaagcacatgagagatcactcaatactgatgttttgtttggcatactgaag
aaggttgttgcacgtcgacgagattttaagctaattgtcacatctgcaaccctaaatgcg
gacaaattctcaaaattttttggaggagtgcctgtcttccatattcctggcaggacattt
cctgtaaatatcatgttcagcaaaacaccatgtgaagactatgtggaagcggcagtgaag
caggctatgacaatccacataaccagtggccctggggatatacttatatttatgacaggg
caagaggaaattgaggctacctgctatgcgcttgctgagcgcctggagcagctgatatca
tcatccaccaagactgtacccaagctctccatcttgcccatctactcgcagttgcctgct
gacctgcaggccaaaatctttcagaaggcagaagagggcactcgcaaatgcattgttgct
accaacattgctgagacctcgctcactgtggatggtattttttatgtcattgatactggg
tatggaaagatgaaggtgtacaatccacggatgggtatggatgctcttcaggtttttcca
gttagtcgagcagctgcagatcagcgtgcaggacgtgcaggaagaactggtcctggcaca
tgctacagactgttcacagaatcagcttaccagaatgagatgctacctaacccagtgcct
gagatccaaaggaccaatctggggaatgtggttctgctactgaaatctctgaaagtcgaa
aacttgcttgactttgacttcatggacccacccccgcaggagaacatcctcaactccatg
taccagctctgggtgttgggtgccttgaacaatgttggtgctcttacagtaataggttgg
aagatggttgaattcccgttggacccaactctagcaaagatgcttctcatgggagaacag
ctggagtgccttgatgaagtactgaccattgtgtcaatgctctcggtgccctcagtcttc
tttcgtcccaaagatcgagcagaggagagtgatgcagcaagggagaaattttttgttcca
gaatctgatcatttaactcttctgaatgtctacctgcaatggaagtcgaaccaatatcgt
ggagactggtgtaatgaccacttcctccatgtcaagggtctccgaaaggctcgagaagta
aggtcacagctattggacatactgaaaaccctgaagatcccactgacatcatgccatatg
gaatgggatgtggtgagaaaagccatctgctctgcatacttccataatgccgcgaggttg
aagggtgtcggggagtatgtgaactgccggaacgggatgccatgccacctccaccccagc
agtgcactctacggccttggttacacccctgactatgttgtctaccatgagcttgtcctg
acgaccaaagagtacatgcagtgcgtcaccgctgttgacccgcagtggctggcagagttg
ggccctatgttcttctctgttaaggaaaccgacacctcgctcctcgaccataagaagagg
cagaaggaggacaagaccgcgatggaggaggagatggagaagctgaggcaagaacaagcc
gaggccgcacggcttgagaaggagagggagcgagagaagagagctaagcagcagcagcaa
gtttctatgccgggcttgaagaaaggctcgacatacttgaggcccaaaaggatgggtcta
tag
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integrated database retrieval system
