KEGG   Oryza sativa japonica (Japanese rice): 4343446
Entry
4343446           CDS       T01015                                 
Name
(RefSeq) tyrosyl-DNA phosphodiesterase 1
  KO
K10862  tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    4343446
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:osa03400]
    4343446
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     4343446
SSDB
Motif
Pfam: Tyr-DNA_phospho FHA_2 Yop-YscD_cpl FHA
Other DBs
NCBI-GeneID: 4343446
NCBI-ProteinID: XP_015646620
UniProt: Q7XHY3 B9FXL9
LinkDB
Position
7:complement(join(20967477..20967550,20967635..20967776,20967863..20967940,20968076..20968166,20968258..20968311,20970377..20970480,20970777..20970926,20971420..20971554,20972295..20972384,20973082..20973339,20973417..20973493,20974412..20974472,20974973..20975191,20976222..20976494,20976600..20976791,20977049..20977066))
AA seq 671 aa
MTSSSRVRVGNLVPLNEGNASSSNGSVSSIPIYLGANVVGRNHLVVVDKRVSRKHLSLHA
SADGSIEAVVEGPNPIIVRSEGQRRKVCAQERVKIAHDDVLELIPGEYFVKYLNVGDNHK
SSTSMGSSDFKKGKRLCEDDTVVIKRNRQIMEDEALARSLQKSFAEESSTISGLGCDQML
SSLDSAGFSERNNERIHSVDYLKDVLSLTFRLMRVQGLPSWTNTSSVTIQDVIQGEVLLA
VLSNYMVDMEWLLTACPSLRKVRHVLVIHGEDGASVELLKKVKPANWILHKPPLPISFGT
HHSKAMLLVYPQGIRVVVHTANLIHVDWNNKTQGLWMQDFPWKDAKDVNRSVSFENDLVD
YLSAIKWPEFRVNLPVVGDVNINAAFFRKFDYKSSSVRLIGSVPGYHVGPNIKKWGHMKL
RSVLEGCTFEQQFCKAPMIYQFSSLGSLDEKWMSEFAFSLSAGKSDNGSPLGIGKPLIVW
PTVEDVRTSIEGYAAGSCIPSPQKNVEKDFLRKYWARWKADHVGRCRAMPHIKTFTRYNG
QDIAWFLLTSANLSKAAWGALQKNNTQLMIRSYELGVLFLPKTHQSVPQFSCTGKNNSNL
NNLAPGKEIKTKLVTLCWKSDEEKEQSTEIIRLPVPYQLPPKPYGTEDVPWSWDKRYTKK
DVYGSVWPRHG
NT seq 2016 nt   +upstreamnt  +downstreamnt
atgacgtcctcgtctcgagtaagggttggcaatctagtccccctcaatgaaggaaatgcg
agctcgtcaaatggatcggtgtcaagcattcctatctatctgggtgccaatgttgtaggg
aggaatcatttggtggtcgtcgacaagagagtcagccgcaagcatctgagcctacatgcc
tcggcggatggttccattgaagcggtagtggaaggaccaaatcctatcattgttcgatct
gagggccagaggaggaaggtctgtgctcaagagagagtaaagattgcacatgatgatgtc
ctggaactcatccctggtgaatattttgtgaagtatttgaatgtgggcgataaccataaa
agttccacatcaatgggttcaagtgattttaaaaaggggaagaggctctgtgaggatgat
actgtagttatcaaaagaaatcgtcagattatggaagatgaggctttggcaagaagttta
cagaaaagctttgcagaagaaagttcaactatttccggtttgggttgtgatcaaatgtta
agttcacttgatagtgctggtttttctgagagaaataacgagagaatacactctgttgat
tatctgaaagatgtactttcattgacttttcggctcatgcgtgtccaaggtcttccttca
tggactaatacttcctcagttaccattcaagatgtcatacagggtgaagtgcttcttgct
gtactctcaaattatatggtggacatggaatggctgcttacagcatgtccaagcttaagg
aaagttcgacatgtcctagttatacatggagaagatggtgcatcagtggagcttctgaag
aaagtgaagccagccaattggatccttcacaagcctccacttccaatttcatttggaaca
catcattcaaaggccatgctgcttgtatatcctcaagggattcgtgttgttgtgcacaca
gcaaatttgatacatgtcgactggaataacaaaactcaggggctatggatgcaagatttt
ccctggaaagatgcaaaagatgtgaatagaagtgtttcctttgaaaacgatttggttgat
tatctgagtgcaattaagtggcctgagttcagggtaaatttaccagtggttggtgatgtc
aacatcaatgcagcattctttaggaagtttgattataagagctcatcggtcaggttgatt
ggatccgttcctggttatcatgttggccccaatattaaaaagtggggtcatatgaagctt
aggagtgttcttgaagggtgcacatttgaacaacagttttgcaaggctcccatgatttat
cagttctcttccttggggtcacttgatgagaaatggatgagtgagtttgcattctcacta
tcagctggtaaatcagataatggttcacctttgggtattggtaaaccactgattgtctgg
cctacagtggaggatgttaggacatcaatagagggttatgcagctggtagttgcattcca
agccctcaaaagaatgttgaaaaagatttcttgaggaagtattgggccaggtggaaagcg
gaccatgtgggtcgttgtcgtgcgatgcctcacataaaaacttttactcgatacaatggt
caagacattgcatggtttctactaacctcggcaaatttaagcaaagctgcttggggtgcg
ttgcagaagaataatacacaactgatgatacgctcatatgagttaggtgtactgttcttg
cccaaaactcaccaatctgtaccacaattttcatgtacggggaagaacaattcaaacctg
aataacctggcccctgggaaagagatcaaaaccaaactggtcacactctgctggaaaagc
gacgaagaaaaagaacaatccacggaaattatcagattgccagtgccatatcaacttcct
ccaaagccttacggcacagaagatgtcccatggtcttgggacaagaggtacacaaagaag
gacgtgtatggttcagtctggccgcgccatggttag

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