Oryza sativa japonica (Japanese rice): 4343622
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Entry
4343622 CDS
T01015
Name
(RefSeq) uncharacterized protein isoform X2
KO
K12606
CCR4-NOT transcription complex subunit 9
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
4343622
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4343622
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
4343622
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rcd1
Motif
Other DBs
NCBI-GeneID:
4343622
NCBI-ProteinID:
XP_015644592
UniProt:
Q0JA69
A0A0P0WEP8
LinkDB
All DBs
Position
7:join(22889304..22889507,22890156..22890227,22890450..22890539,22890711..22890753,22891168..22891274,22891865..22891960,22892560..22892750,22892836..22892905,22893009..22893116)
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AA seq
326 aa
AA seq
DB search
MANLQPSLSIPPSFAGASPPSPSPIGGGGVGGGVGQPAKDMKMASAEQLVLDLCDPELRE
NALLELSKKREIFQDLAPLLWHSFGTVAALLQEIVSIYSALSPPTLSPGASNRVCNALAL
LQCVASHPETRILFLTAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKVDDTEVIS
FLLQTEIIPLCLRTMEMGSELSKTVATFIVQKILLDDVGLRYICATAERFFAVGSVLANM
VVSLAEQPSTRLLKHIIRCYLRLSDNSRACAALQTCLPDMLKDGTFNNCLRDDPTTRRWL
QQLLLNVTGAGMGAAPQPGLDHMMGI
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatctgcagccctcgctttccattccgccctccttcgccggggcctcgccgcca
tcgccttctccgatcggcggcggtggcgtgggcggcggggtggggcagccagccaaggat
atgaagatggcgtcggcggagcagctggtgctcgacctctgcgaccccgagcttcgcgag
aacgccctcctcgagctctcaaagaaaagagagatatttcaagatctggccccacttctt
tggcattcttttggaacagttgctgcacttcttcaggaaattgtgtcaatctactctgca
ctttcacccccaacattgtcaccaggtgcatcgaaccgagtctgcaatgcacttgcactt
cttcagtgtgttgcatctcaccctgagaccaggatccttttcttaactgctcatattccc
ctgtacctgtacccattcttgaatactaccagcaagacaagaccttttgaatacctgcga
ctcaccagcctgggtgtcatcggtgcacttgttaaggttgatgatactgaagttatcagt
tttctgctgcaaactgaaataattcctctgtgtttgcgtaccatggaaatgggaagtgag
ctgtcaaaaactgtggccaccttcattgttcagaagattctcctcgatgatgttggattg
cgctacatttgtgccactgctgagcgtttctttgctgtaggcagtgttttagcaaacatg
gtagtttcacttgctgagcagccttccacaaggttgctgaagcacattatccgatgttac
cttaggctgtcagacaattccagggcatgtgctgcactacaaacttgcctccctgacatg
ctgaaggatggcacgttcaataactgtcttagggatgatcctacaacaaggcgctggctc
cagcaattgcttcttaatgtgacaggcgcaggcatgggagctgctcctcagccaggcctg
gatcacatgatggggatataa
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