Oryza sativa japonica (Japanese rice): 4343686
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Entry
4343686 CDS
T01015
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB5
KO
K10845
TFIIH basal transcription factor complex TTD-A subunit
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03022
Basal transcription factors
osa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
4343686
09124 Replication and repair
03420 Nucleotide excision repair
4343686
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
osa03021
]
4343686
03400 DNA repair and recombination proteins [BR:
osa03400
]
4343686
Transcription machinery [BR:
osa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
4343686
DNA repair and recombination proteins [BR:
osa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
4343686
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb5
Motif
Other DBs
NCBI-GeneID:
4343686
NCBI-ProteinID:
NP_001409155
LinkDB
All DBs
Position
7:complement(join(23415039..23415216,23415307..23415372,23416183..23416334))
Genome browser
AA seq
131 aa
AA seq
DB search
MPDLRLRSSALSRAPPPPPLQAPCSSPVCSYRSVQRRTGAREDNSTGRRQRWHSVLQRAE
NMVNAIKGLFISCDVPMAQFIVNLNASMPASDKFILHMLDPTHMFVQPHVAEMIRSKISE
FRDQNSYEKPT
NT seq
396 nt
NT seq
+upstream
nt +downstream
nt
atgcctgacctccgcctccgatcctccgccctgagccgcgcgccgccgccgccgccgctg
caggctccttgttcctcgccggtttgctcgtatcgctccgtacaacgacgcaccggtgct
agagaagacaacagcacagggaggcgacaaaggtggcattctgttctccaaagagcagaa
aacatggttaatgcaataaaggggttgttcatctcctgcgatgtaccgatggcacagttc
attgttaatctgaatgcttcaatgcccgcttcggacaagttcatcctgcacatgcttgac
ccgacacacatgtttgtgcagcctcatgtggcggagatgatcagaagtaagatttcagag
ttcagagaccaaaacagctacgagaagccaacatga
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