KEGG   Oryza sativa japonica (Japanese rice): 4343770
Entry
4343770           CDS       T01015                                 
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1
  KO
K14962  COMPASS component SWD2
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    4343770
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4343770
   03036 Chromosome and associated proteins [BR:osa03036]
    4343770
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     4343770
Chromosome and associated proteins [BR:osa03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     4343770
    COMPASS/SET1 complex (yeast)
     4343770
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_WDHD1_1st WD40_CDC20-Fz Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 EIF3I WDR55 ANAPC4_WD40 WD40_MABP1-WDR62_2nd NBCH_WD40 Beta-prop_TEP1_2nd WD40_MABP1-WDR62_1st Beta-prop_IFT122_1st Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_C PQQ_3 Beta-prop_EML Beta-prop_SPT8 Beta-prop_WDR75_1st Beta-prop_NUP159_NUP214 PQQ_2 Beta-prop_SCAP Beta-prop_VPS8 Beta-prop_EIPR1 Beta-prop_Vps41 PQQ Beta-prop_Nup120_160 Beta-prop_WDR35_TULP_N B-prop_COPA_B_2nd DJR-like_dom
Other DBs
NCBI-GeneID: 4343770
NCBI-ProteinID: XP_015645026
UniProt: B9FY69 Q84Z07
LinkDB
Position
7:join(24245323..24245391,24246943..24247046,24247641..24247741,24247817..24247883,24247971..24248070,24248495..24248608,24248674..24248811,24248890..24248974,24249054..24249100,24249241..24249384)
AA seq 322 aa
MVSMEVTDEMFKCMEVGLAFRDYNGRISSMDFHSKATNYLVTACDDESIRLYDIQNAVCL
KTINSKKYGVELVCFTENPTYVLHSSKNGWDDSLRLLSLVNNCFLRYFKGHLDRVVSISL
CSENGNILSGSLDRTVLLWDSRVEKAQGLLRVQGRPAVSYDDQGLVFAIAYGGYIRMFDA
RNFEKGPFDIFSVGNDDSEANVIKFSSDGRRLLLTTKAGRVHVLDSFHGNNIATYNVKPV
VSNSTLEASFSPDGNHIISGSGDGSVYAWNVRSGKVARWGSTDSEPPLIRWAPGSLMFLT
ASSELSCWVPDLSKLGSFTVSK
NT seq 969 nt   +upstreamnt  +downstreamnt
atggtgagcatggaggtcaccgatgagatgttcaagtgcatggaggttgggctggccttc
cgggactataatggaagaatcagttctatggatttccacagcaaggctacaaattacctc
gtgacagcatgtgatgatgaatcaattcgcctatatgacattcaaaatgctgtgtgtttg
aagacgattaatagcaaaaaatatggggttgagcttgtgtgcttcactgaaaacccaact
tatgtcttgcattcttcaaaaaatggatgggatgattctctccgtctactctcactggtc
aataactgttttttgagatatttcaaaggccatctagacagggttgtttctatctcattg
tgctctgagaacgggaacattctctctggttcacttgatcgaacagttctcctatgggat
tcaagggttgaaaaagcacagggtttgctgcgtgttcaggggaggcctgcagtttcttat
gatgatcagggtttggtttttgcaattgcatatggtggctacataaggatgtttgatgct
cgaaattttgagaaggggccttttgatattttctctgtcggtaatgatgattcagaagcc
aatgtcataaagttcagcagtgatggcaggcggcttcttttaaccaccaaagctgggcgt
gttcatgtgctagattcatttcatggcaataatatagcaacatacaacgtgaagccagtg
gtaagcaattcgacgctggaagcatcattcagccctgatggaaaccatataatatctggc
tctggtgatggcagtgtatatgcttggaatgttaggagtggaaaggttgctcgctgggga
agcacagatagtgagccaccgctaattagatgggctccaggatctttgatgttcttgact
gcatcttcggaactgtcttgttgggtccctgatctatctaagctgggatcctttactgtt
agtaagtaa

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