Oryza sativa japonica (Japanese rice): 4343955
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Entry
4343955 CDS
T01015
Name
(RefSeq) serine/arginine-rich splicing factor SC35 isoform X1
KO
K12891
serine/arginine-rich splicing factor 2/8
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
4343955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
osa03041
]
4343955
Spliceosome [BR:
osa03041
]
Common components
Common spliceosomal components
SR proteins
4343955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
RRM_Nup35
RRM_5
RRM_occluded
YflT
Motif
Other DBs
NCBI-GeneID:
4343955
NCBI-ProteinID:
XP_015647052
UniProt:
Q0D4I7
Q8LHL0
LinkDB
All DBs
Position
7:join(26019813..26019888,26019997..26020075,26020175..26020254,26020350..26020416,26021310..26021381,26021833..26021985,26022071..26022154,26022236..26022452)
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AA seq
275 aa
AA seq
DB search
MSRFGRSGPPPIRDTYSLLVLNITFRTTADDLSPLFEKYGEVVDIYIPRDRRTGDSRGFA
FVRYKYEDEAQKAVDRLDGRVVDGREIMVQFAKYGPNAERIHKGKIMETVPRSRGRSRSR
SPRRGYRDDYRERDYRKRSRSRDRYGRDRYRERDYRRRSRSRSYTPDDYRRRGRDSVSPA
RRSLSRSRSRSYSPDDYRKRGKHSQSPVCKSPSAKRSPSMSPARRSPSASPARRSPSASP
VRRSPSRSPRRTPSSQEGSPVKRYDEPRRSRSPST
NT seq
828 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcgcttcggccgctccggcccgccgccgatccgcgacacctactccctcctcgtc
ctcaacatcaccttccgcactacggcggatgacctctcccctctcttcgagaagtacggc
gaggtcgtcgacatctacatccctagggaccgcaggactggtgattcgcgagggtttgcg
ttcgtgaggtacaagtatgaggacgaggcgcagaaggcagtcgatcggcttgacgggaga
gtggtagatggaagggagatcatggtgcagtttgccaagtacggcccgaacgctgaacga
atccataaaggaaaaatcatggagacagttccaaggtctaggggtcgttccagaagccgc
agtccaagacgggggtaccgtgatgactatcgggagagagactatagaaagcggagtcgg
agtagagatagatatggacgtgacaggtatagggagagagattatcgtcgtcgtagcagg
agccgcagctacactcctgatgattacaggagacgtggcagagacagtgtgtcacctgca
cgcagaagcctgagtcgtagcaggagtcgtagctacagtcctgatgattacaggaagcgt
ggcaaacacagtcaatcgcctgtgtgtaaaagccccagtgcaaaaagaagccccagtatg
tcgcctgcacgcagaagccccagtgcttcgcctgcacgtagaagccctagtgcttcgcct
gtgcgcagaagccctagtcgctctcctcgcaggacaccatcttctcaagagggatctcct
gtcaagcgctatgatgagcctaggcgctctcgtagcccttcgacgtaa
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