KEGG   Oryza sativa japonica (Japanese rice): 4344175
Entry
4344175           CDS       T01015                                 
Name
(RefSeq) protein CHROMATIN REMODELING 5
  KO
K11367  chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
osa  Oryza sativa japonica (Japanese rice)
Brite
KEGG Orthology (KO) [BR:osa00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:osa03021]
    4344175
   03036 Chromosome and associated proteins [BR:osa03036]
    4344175
Transcription machinery [BR:osa03021]
 Eukaryotic type
  RNA polymerase II system
   Coactivators
    SAGA/TFTC/STAGA complex
     4344175
Chromosome and associated proteins [BR:osa03036]
 Eukaryotic type
  Histone modification proteins
   HAT complexes
    SAGA complex
     4344175
    SLIK complex
     4344175
SSDB
Motif
Pfam: SNF2-rel_dom Helicase_C HTH_Hrp3 Chromo CHD1-like_C ResIII HDA2-3 DEAD Chromo_MIT1 Allexi_40kDa
Other DBs
NCBI-GeneID: 4344175
NCBI-ProteinID: XP_015646688
LinkDB
Position
7:complement(join(28053998..28054485,28054654..28054744,28054824..28055171,28056112..28056293,28056374..28056551,28056636..28056788,28057176..28057415,28057552..28057632,28057731..28057913,28058334..28058423,28058508..28058618,28058719..28058961,28059503..28059712,28060200..28060263,28060345..28060469,28060566..28060659,28060830..28060897,28060981..28061172,28061801..28061935,28062030..28062117,28062197..28062290,28062667..28062730,28062840..28062891,28063094..28063197,28063282..28063341,28063870..28063953,28064075..28064308,28064625..28065047,28065858..28065919,28066050..28066704))
AA seq 1731 aa
MAFFSNSGSRADSGGYNLNEKAEDEAAYESVGDRDVDLNSRQWNLNEKAEDAYHSDEEQY
DGGRSGPNSSENKSVQNARKINGPSGPWGTNFLKDCGPTQTAKEEQLTSNRGMEYGSAAS
SHDDMDASGEDDELNRGHGEVPAEEMLSDDYYEQDGEEQSDSLLRGGMRRPSCSTSGAAA
ESVSSRQKKKPTKYNAYEDEDDDEYNDENDDEDDDDADEDDPDDVDFEPESDTEKAADKD
KFVDSENSDEEEDDELELSDDDEDDFVENKRQCKRLKVGGTKTSKGRKLPVQVQRKRGVS
FTDEDSSGKDSDAPSDTDISHRAKKPDKLHQKTVGRKDVFSNVDSHEVRTSGRRRTARNI
SYAESEESDDSEEKLAKQQKVLKEDPEEEEGETIERILWHQPKGVAEEALRNGQSTQPTV
ISFTSDVDQSWDDVEFYIKWKGQSFLHCQWKTLSELQNVSGFKKVLNYMKRVTDELRYKR
SLSREEVEVHDVGKEMELDLIKQYSQVERIFADRVSKVDGDDLVPEYLVKWQGLPYAEST
WEKDTDIEFAQDAIDEYKAREAATSILGKTVDFQRKKSKASLRRLDDQPEWLKGGKLRDY
QLEGLNFLVNGWRNDTNVILADEMGLGKTIQSVSMLGFLHNAQEINGPFLVVVPLSTLSN
WAKEFRKWLPDMNVVVYVGNRASREICQQHEFFTNKKGGRHVKFHTLITTYEVILKDKAA
LSKIKWNYLMVDEAHRLKNCEASLYTTLLEFSTKNKLLITGTPLQNSVEELWALLHFLDP
SKFNSKDIFVERYKNLSSFNETELANLHKELRPHILRRVIKDVEKSLPPKIERILRVDMS
PLQKQYYKWILERNFQNLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSIGD
RNKVERIVMSSGKLVLLDKLLVRLRETNHRVLIFSQMVRMLDILAEYLSLRGFQFQRLDG
STRADLRHQAMEHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMS
RAHRIGQQETVNIYRFVTCKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKESKKGGS
MFDKNELSAILRFGAEELFKEDKTDEETKKKLESMDIDEILERAEKVETKGGEGEEGNEL
LSAFKVANFSSGEDDATFWSRLIQPDASDMVEETLAPRAARNKKSYVEDHQLDKNSNRKR
RGIDAQEKPRRRSSRTMDTAVSLPLIDGSAHQVREWSFGNLSKKDATRFVRAVKKFGNPS
QIGLIVDDVGGAIAKSSVDQQLELFTLLIEGCQDAVKNNMDAKGTVLDFFGVAVKAHELI
ARVEELQFLARRIARYKDPVRQYRIQAPYKKPQWSASCGWTETDDARLMVGIHWYGYGNW
EKIRLDPKLSLTAKIAPATLGERETFLPRAPNLDNRASALLQKEFANLRGKSSKAKGGPR
QAIDNESNGGARSLRGRQKDTKIKEDNNSIKDDFKKRKVVEPEAREEGEISESEAETKYR
QDKEEKWLEWCSEVLDDEQEILKRLDRLQNTSVNLPKEKVLSRIRKYLQIIGNKIGEIVD
QHSESYKQSRMAMRLWNYVANFSSMSGEQLHDLYLKLSQDQMEAGVGPSHGGNFASVPPN
RGPKSNQLHPSRNQRSTRSVQYVSESFNNGENTGNSEAWKRRRRSEPDNQFDNQPLYQAP
PIMTNGNRLQESSSSAGILGWAPVEMRRYGNERPKRGVHPSRFPPGHGPLL
NT seq 5196 nt   +upstreamnt  +downstreamnt
atggcattcttcagcaactctggaagcagggctgattcaggagggtacaacctgaatgag
aaggctgaggatgaagctgcctatgagtcagttggggacagggatgtcgacttgaactct
aggcaatggaacttaaatgagaaggctgaggatgcctatcatagtgatgaggagcaatat
gatggtggccggtcaggtccgaactcctcggagaataaatctgtgcagaatgcccggaaa
ataaatgggccttctggcccatggggtacaaactttttgaaggattgtggacccacacag
acggctaaggaagagcaattgaccagtaacaggggaatggaatatgggtcggcggctagt
tcacatgacgacatggatgctagtggagaggatgatgagctgaaccgagggcatggggag
gtgcctgctgaggaaatgctctctgatgactactatgagcaggatggagaggagcagagt
gattcattgcttcgtggtgggatgcgccgcccaagctgttctacttctggggctgcagca
gaatctgtctcctctagacaaaagaagaagccgacaaaatacaatgcttatgaggatgaa
gatgatgacgagtacaatgatgagaatgatgatgaagacgatgatgacgcagacgaagat
gatccagacgatgtggattttgagccagaaagtgatactgaaaaggctgccgataaggat
aagtttgtggatagtgagaactccgacgaagaagaagatgatgagcttgagctctcagat
gatgatgaagatgattttgttgagaataagaggcaatgtaagcgacttaaggttggtgga
actaaaacctccaagggaagaaagcttcctgtacaggttcaacgcaaacgaggggtgtct
tttacagatgaagattcttcaggaaaagactctgatgctcccagtgatactgatatcagt
caccgagcaaaaaaacccgacaagttgcatcagaaaactgtaggccgcaaggatgttttc
tcaaatgttgattctcatgaggttcgaacttctggaaggaggaggacagctagaaatatt
tcatatgctgaaagtgaagaaagtgatgatagtgaggaaaagttagctaagcaacaaaag
gtcttgaaggaggacccagaagaggaagaaggggaaacaattgaaagaatcctttggcat
caacctaagggtgttgctgaagaggcactgaggaatggccaatcaactcaacctactgtg
attagcttcacatcagatgtggatcaatcatgggatgatgtagaattctatataaaatgg
aagggccaatcattcttacattgccagtggaagacattatctgagctccaaaacgttagt
ggatttaaaaaggttctaaattacatgaaaagagttactgacgagctgaggtacaagcga
tcgttatcacgtgaggaggttgaggtgcatgatgtgggcaaggaaatggagctggatctt
attaaacagtacagccaggttgaacgcatatttgctgatagggttagcaaagttgatggc
gatgacctggtgccagaatatttagtcaaatggcaaggacttccttatgcagaatcaacc
tgggaaaaagatacagatattgaatttgctcaggatgctattgatgagtacaaggcccgt
gaagctgcaacatctatactcgggaaaacagttgatttccaaaggaaaaaaagcaaagct
agtttgcggaggcttgacgaccaaccagaatggctaaaaggaggcaaactacgtgattac
cagcttgaaggcctaaacttccttgttaatgggtggagaaatgacactaatgttattctt
gctgatgagatgggtctgggaaaaactattcaatctgtctccatgctgggtttccttcat
aatgctcaagaaattaatggtccgtttcttgtggttgttccactgtcaacattgtcaaac
tgggcgaaagaatttcggaaatggctacctgacatgaatgttgtggtttatgtgggaaat
cgtgctagcagagagatctgccagcagcatgaattttttacaaataagaagggtggtcga
catgtaaaattccatacattgataactacttatgaggtcatacttaaggacaaagctgcc
ctttccaagatcaaatggaactatcttatggtcgatgaagctcatcgattaaagaattgt
gaagcatcgctgtatacgactcttttggaattcagcactaagaataagcttctcatcacc
gggaccccattgcaaaacagcgttgaagagctctgggcgttacttcatttccttgatcca
tctaaattcaacagcaaggatatatttgttgagagatacaaaaatttgagttccttcaat
gaaactgagcttgcaaatcttcacaaggaattgaggcctcatattctaagacgagttata
aaagatgtggagaaatctttacctccgaaaattgagcggattcttcgtgttgatatgtct
cctctacagaagcagtattacaaatggattttggagcggaatttccagaatctcaacaaa
ggagttcgtgggaatcaggtctcgcttttaaatatcgttgttgagttgaaaaagtgctgc
aaccacccatttttatttgaaagtgctgatcatggttatggtggagatagcattggtgat
cgcaataaagttgaacgcattgttatgagtagtgggaaattagtgttattggacaagctg
ttggtaagactgcgggagactaatcatcgtgtgcttatcttctctcagatggttaggatg
ttggacatccttgctgagtatctatccctccgaggattccagtttcagaggcttgatggc
agtacgagagcagatcttcgtcaccaggccatggagcattttaatgctcctggaagtgat
gacttctgttttcttctgtctacacgtgctggtgggcttggtattaatcttgcaacagca
gataccgtgatcatttttgattcagactggaatccgcaaaatgatttacaggcaatgagt
agggcacacaggattgggcaacaagaaactgttaacatatatcgtttcgtgacatgcaaa
agtgttgaagaggatatattggaacgtgcaaagaaaaaaatggttcttgatcacctagtg
attcagaagctaaatgctgagggcaggctcgagaagaaagaatcaaaaaaaggtggttcc
atgtttgacaagaatgaactttcagcgatattgagatttggagcagaagagttattcaaa
gaagataagactgatgaagagaccaagaagaagcttgaaagcatggacattgatgaaatt
ctcgagagagctgagaaagttgaaacaaagggtggtgaaggggaggaaggaaatgaactt
cttagtgcattcaaggttgccaacttttctagtggtgaggatgatgccacattctggagc
agattaattcaaccagatgcttcagatatggttgaggagactttagcacctcgtgctgca
agaaataagaagagctatgttgaagatcaccaacttgataagaatagcaacaggaaaagg
cgaggaatcgatgcacaagaaaagccaaggaggcgttctagcagaacaatggacacagct
gtgtcattaccactcatagatggttcagcacatcaagtacgagaatggtcatttggaaat
ttgtcaaagaaagatgctacccgatttgttcgagcggttaaaaaatttggaaacccaagc
caaattgggttaatcgtggatgatgttggtggtgcaatagcaaagtcttcggttgatcaa
cagcttgagctgtttactctactcattgagggttgtcaagatgctgttaaaaataatatg
gatgccaagggcacagtgttggatttttttggtgtagcagttaaggcgcatgagttgata
gcccgtgtggaagagctacagttcctggcaaggcgcattgcacgttacaaagatccagtt
agacaataccggatccaggcaccttacaaaaagccacagtggtcagcaagctgtggttgg
actgaaactgatgatgcaagattgatggttggaattcattggtatggctatggaaattgg
gagaagatacgattagatccaaaacttagcttgacagcgaaaattgcaccagcaaccctt
ggtgaacgagagacgtttttaccgcgtgcaccgaacttggataatcgtgctagtgctctt
ctacaaaaggaatttgccaatcttcgtggtaagagctcgaaagccaagggaggtcctcgt
caagcaattgataatgaaagcaatggtggagctcgttcattaagaggccggcaaaaagac
acaaaaataaaagaagataataattcaattaaagatgactttaagaaacgcaaggtggtg
gaacctgaagcaagggaagaaggtgaaatttcagaatctgaagcagagactaaatatcgt
caggacaaggaagaaaagtggctggaatggtgttctgaagttttggatgacgagcaggag
atattaaagcggctggataggcttcagaatactagtgtaaatctgccaaaggaaaaggtt
ctttcaagaattcggaaatacctccagataattggtaataaaattggagagatcgttgat
caacatagtgaatcatataagcaatcacgtatggcaatgaggttgtggaactatgtggca
aacttttcaagtatgtccggggagcaattgcacgacctctatttaaaacttagtcaggac
caaatggaagctggagtaggtccgtcacatggtgggaattttgcatcagtccctcccaac
agggggcctaaatcaaatcagctccatccttccagaaaccaaaggtcaacaaggtctgtc
cagtacgtctctgagtctttcaacaatggtgaaaacactgggaattctgaagcctggaag
cgacggagaagatctgagcctgataatcaatttgataaccaacctttgtatcaggctcct
ccaatcatgacaaatggaaacaggttacaggaatctagcagttctgctggtattcttggt
tgggctccggttgaaatgagacgatacggcaatgaaagaccaaaaagaggtgttcatccc
agtcgttttccacccgggcatgggcctttgctgtag

DBGET integrated database retrieval system