Oryza sativa japonica (Japanese rice) (RefSeq): 4344306
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Entry
4344306 CDS
T01015
Name
(RefSeq) probable ATP-dependent DNA helicase RecQ isoform X1
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
4344306
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4344306
03400 DNA repair and recombination proteins [BR:
osa03400
]
4344306
Enzymes [BR:
osa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
4344306
Messenger RNA biogenesis [BR:
osa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
4344306
DNA repair and recombination proteins [BR:
osa03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
4344306
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
RQC
DEAD
HTH_40
HRDC
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-GeneID:
4344306
NCBI-ProteinID:
XP_015645652
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All DBs
Position
7:28901449..28908684
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AA seq
889 aa
AA seq
DB search
MEAALKTYFGFSGFRSYQREIIQKVLEGRDCLVVMATGSGKSICYQIPPLVTKKTAVVVS
PLLSLMQDQVMSLKQHGVKSEYLGSTQTDISVSGQAEKGAFDVLYMTPEKAVSLPSRFWS
NLQAAGICLLAVDEAHCISEWGHDFRTEYKQLHMLRDLLVGVPFVALTATATQRVRGDIA
TSLTLRIPHIVVGSFDRPNLFYGVKSCNRSMAFINELVKDVSKNCTVGGSTIIYCTTIRE
TEQVHEALVAAGIKSSIYHGRMGNKAREESHRSFVRDEVLVMVATIAFGMGIDKPDVRCV
IHYGCPKSLESYYQESGRCGRDGLPSVCWLYYQRSDFMKSDFYCAEAKSQTHRKAIMESF
MAAQKYCLLATCHRKFLLQYFGEDRTTDCGNCENCTRTKNERDLSKESFLLLSCIKSCGG
RWGLNLPIDVLRGSRVKKIVENNFDKLPLHGRGKDYPPNWWKALGGLLLAHDYLKETVHD
TFRSISVSPNGYKFLSTADKGDGASLFLQLTAEMIELEGHGGSQCKEEGLNPLGPSESEK
ISEDELKIYQVLLNVRMQLAQDIGTAPYAICGDQTLRNFAKFRPSTIARLANIDGVNQHF
ISHYGSIFIQNITQLAKELNLPVDDLSAVESIPAAPKPTQNNLPRSLGGAKFCSWELWQK
MKFSFQKVAHYRRAVPIKEKTVISYILDAARDGCEMDWSRFCEEVGLTHEIASQIRLAIT
KLGSHEKLKPIKDELPENVTYEMIQTFLAIEGLGLSDQVFGTVPTDGIQSKTSEAPKTTS
NGGEVGADVCDASPLTRRGQTDGSLICGDEPASKLQKIDGQGVNSTAAIGATEDAILELV
EGRNGLLQVSLEDVVKHFNGSKRECVVEMLDNLEGNFLVYKKNGCYMIM
NT seq
2670 nt
NT seq
+upstream
nt +downstream
nt
atggaggcagctctgaagacgtatttcggcttctcggggttccgttcgtaccagcgggag
atcatacagaaggtcctggaaggccgggattgcttggtcgtcatggccaccggcagcggc
aagtcgatctgttatcaaatcccaccacttgttacaaagaagacagctgttgttgtcagc
cctcttctgtcattgatgcaagaccaggtcatgagcttaaagcagcatggcgtgaagtct
gaataccttggcagcacccaaacagacatctctgttagcggtcaggctgaaaaaggcgca
ttcgatgttctgtacatgacaccagagaaagctgtctcacttccttcaaggttttggagt
aacttgcaggctgccggaatctgcttgttggctgtcgatgaagcacactgcatatcagaa
tggggccacgatttcagaacggagtacaaacagttgcatatgttgcgtgaccttctagtg
ggtgttccctttgtcgctttaactgcaacagccacacaaagggtacgtggagacattgcc
acttccttgaccctgcgcattcctcacattgtggtaggatcatttgatcgtcctaacctt
ttctatggcgtgaaatcatgcaaccggtctatggcctttatcaatgaacttgtgaaggat
gtctcaaagaactgtactgtgggtggctcaacaataatatactgtactaccatccgagag
actgaacaggtgcatgaggcattggttgctgctggaatcaagtccagcatttaccatggt
agaatgggaaataaagctagagaggaatcacatagatcgtttgttagagatgaagtactt
gtgatggtggctaccattgcttttggaatgggaatcgacaagccagatgttagatgtgta
atacattatggatgtccaaagagcctggaatcctactaccaggaaagtgggcgttgtgga
agagatggactgccttcagtctgctggctatattaccaaagaagtgattttatgaaatct
gatttctattgtgctgaagctaaaagtcaaactcatcgaaaagccatcatggagtccttc
atggcagcacaaaaatattgcctgcttgctacatgtcacagaaaattcttgctgcagtac
tttggcgaagaccgcaccactgactgtggtaattgtgaaaattgcacaaggacaaaaaac
gagagggatttgtcaaaagaatccttcttgttgctgtcctgcattaagtcctgtggtgga
cggtggggccttaatttgcctattgatgttctccgtggatcacgtgtcaagaaaatagtt
gaaaacaattttgataaacttccattgcatgggcggggaaaagactatccaccaaactgg
tggaaagctcttggcggcctgcttttagcacatgattatttgaaggagactgtccatgat
acatttagatccatcagtgttagtcctaatgggtacaagtttctatccactgctgataaa
ggggatggagcatcgctgtttttacagctgactgcagagatgattgagctagaggggcat
ggtggttcacagtgtaaagaagagggcttaaatcctttgggcccatcagaatctgaaaaa
atttctgaggatgaattgaaaatctaccaagtactcttgaatgtcaggatgcaacttgca
caagatattggaacggcgccgtacgctatatgtggtgatcagacactaagaaactttgcg
aagttcaggcctagcaccatagctaggttggctaatattgatggtgttaaccagcacttc
atctcgcattacggcagtattttcatccaaaatatcacacaattggcaaaagaattgaat
cttcctgtggatgatttatcggctgtagaaagtatacctgctgctccaaaacctacacaa
aataatctcccaaggagtttgggtggcgcgaaattttgttcatgggaattgtggcagaaa
atgaagttttcgttccagaaagttgcgcattaccgcagagcagtaccaataaaagagaaa
acagtcatttcctacatacttgatgctgctcgagatggatgtgagatggactggagtagg
ttttgtgaggaggtaggacttacacatgagatagcctcacagatccgtcttgccattaca
aagcttggatcacatgaaaagttgaagccaatcaaagatgaacttccagaaaatgtaact
tatgagatgatccagacattcttggcaattgagggacttggattgtcggatcaagttttt
ggtactgttcctactgatgggatccagtccaagacatcagaggcaccaaagaccacctcc
aatggaggtgaagttggcgcagatgtttgtgatgcaagccctttgacaaggagaggccaa
actgatgggtcattgatttgtggtgatgagccagcaagtaaactacaaaagatagacggg
caaggtgtaaattctactgccgcaatcggtgccacagaggatgcaatactagaactggtt
gaaggacgcaatgggttgttgcaggtttcgttggaggatgttgtcaagcacttcaatggg
tcgaaaagagaatgtgtcgtcgagatgttggacaatctggaaggcaattttctggtgtac
aagaagaatggctgctacatgattatgtga
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