Oryza sativa japonica (Japanese rice): 4344363
Help
Entry
4344363 CDS
T01015
Name
(RefSeq) LOW QUALITY PROTEIN: BRCT domain-containing protein At4g02110-like
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
4344363
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
osa03032
]
4344363
03400 DNA repair and recombination proteins [BR:
osa03400
]
4344363
DNA replication proteins [BR:
osa03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
4344363
DNA repair and recombination proteins [BR:
osa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
4344363
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
BRCT_2
RTT107_BRCT_5
PHD
Motif
Other DBs
NCBI-GeneID:
4344363
NCBI-ProteinID:
XP_015647448
LinkDB
All DBs
Position
7:complement(join(29577464..29578017,29578179..29578395,29578792..29581593,29581774..29581818,29581914..29581998,29582431..29582515,29584069..29584170,29584387..29584491,29584580..29584669,29584803..29584898))
Genome browser
AA seq
1393 aa
AA seq
DB search
MPAHGGQDADNRRLFAGVRFALLGFDPVSESQYRSEMVQRGGVDAGAYGAGCTHLIVCDL
LYDNPICVAARKDGTKVVSEQWVDDSLDLGEMADADRVLYRPVRDFSGIPGSQSLRICLT
GYQKNWRDDIMKMASLMGAEFSKSFDALKDTHLICYKFEGEKYKVAKRENTAKRANVSLV
NHQWLEDCLMAWKILPADDYTKSGWEIEIMAAQAKDSEDDEEEAGRSSSHSKRATRSART
KDIRMATLVDPHSQAPTRDPTISSCSAEITAGGHMSTPERITKAGGSTSRSLNIKSDIRN
TPISADSDAYESAHFPLNGKEEAPAAQVHRAEAKDDVKMAVDASPGAHCISNIAGTTVCS
DHHVHQSTTAPAMLVDKTETIGGNCLDSSNQNNVNIALWSTPSKETFSEKTLRPSGISGN
VGQKDGGSTPDLNTAVDQSNTARELTLCEANLRLTGNAASKKNSQVLSYNRRRCRKSVSP
EANLKPTGSPQSFEGVTPRVDFTISPSMKSDHKISDITDAESLRDVEIVKKVNKSSGALA
QKRASKLSSISMKPSVSSETGTANSPFSSRESASEAATFSDPSRNSAESVILTAKEKSGQ
SKSNLLSYRRALKLARPVEGEKLSENSTKSKKSLRENTLALHEVDKGGSSSENGLRSEKG
CAANSSADSEVDKRSSSSSLQNRDTEMSDVPQVDKTEVVAPNTDFAIVVSHQNMEVVPKS
IQVTATISECETFPQEEPTSKVKNASVKRFGNASNKAATRSVKNKDEIVSFKSDGDKVEV
QPEKNHARPNGAECTVFIPEEIPNSKANNAATNNSRDALQMNTALALSKTELAEKNPGSA
SADEYRKSSCEKVSQTADVEMPDAPIVDSTGAMFSKSGFKEVFPPENAGSCPKRLSTNTN
MGGPETCTPSIVPNNRVRKAAAKRKVSAVQQNSFGDVPCKNSSAVVSEFKFVYKRASEGP
RNGSKKTMDQNLQSSNEDGARDAGVSFSEDDMRDRSKILQNSQARSSKRQKAADLMDGST
DHDKENLPGNHNISKSKYGNSCTSLNSFIQAAGSGKDRLADRGVVEENDCGMLTVLEPRL
FILSGHRLLRKEYKLILRRLKGRVCRDSHQWSFQATHFISPELRRTEKFFAAAAAGRWIL
KSDYLTACNEAGKFLEEEPFEWHGNGLNNGDTISLDAPRKWRQLRQHTGHGAFYGMQIII
YGECISPSLDTLKRAVRAGDGTILATSPPYTRFLKKPDHVDFAVVSAGTPSADAWVEEFK
RQGIPCISADYLVEYICKPGQSLNKHVLFNMHDLADKSHAKLLKGQLDDVLGEATXGDAA
EPTCSACGSNDREGGLMLICGSGSDEENGTRMHIPLEAEAEATPGDGGEWLCTSCHKNKF
PHKSAKSRVLKRS
NT seq
4181 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcacacggcggccaagatgccgacaaccggcgcctcttcgccggcgtccgcttc
gcgctccttggcttcgaccccgtctccgagtcccagtatcgctccgagatggtgcagcgc
ggcggcgtggacgccggggcctacggcgcaggctgcacccacctcatcgtctgcgacctc
ctatacgataacccaatctgcgtggcggcgcgcaaggacggcaccaaggtcgtatccgag
caatgggtggacgatagcttggatctcggagagatggctgatgctgatcgggtactatat
agaccagtgagagatttcagcggcataccgggtagtcaatcactacgcatttgcttgaca
gggtaccaaaagaattggcgtgacgatattatgaaaatggcttctttgatgggagcagag
ttctccaagagttttgatgcgctcaaagacacccatctcatttgctataaatttgaaggt
gagaagtacaaagttgcaaaacgggaaaataccgccaaacgggcaaatgtcagtctggtt
aatcatcagtggctggaagattgcttaatggcatggaaaattcttccagctgatgattat
acgaaaagcggttgggaaatagagataatggcagcacaagccaaggactccgaagatgat
gaagaagaagctggtagaagctcatctcatagtaaacgtgcaactagaagcgcacgcact
aaagatattagaatggctactcttgttgatcctcatagtcaagcacccactagagatcct
actatctcctcttgcagtgcagaaattactgctggaggacacatgagcactccagagcgg
attacgaaagcaggaggttcaaccagtagatcactcaacattaaatcagacatacggaat
actccaatatctgctgattctgatgcttatgaatctgcccattttcctcttaatggcaag
gaagaggctcctgcagctcaggtccacagagctgaagccaaagatgatgttaaaatggca
gttgatgctagtcctggtgcacattgtatttccaacatagctgggaccacagtttgttct
gatcatcatgtgcatcaatcaactactgcacctgctatgttggtggacaaaacagagacc
attggtggaaattgtttggatagcagtaatcagaacaatgtgaacattgcactttggtca
accccttccaaagaaactttctcagagaaaacattacggccatcaggtataagtggaaat
gtaggccagaaggatggtggatctacacctgatcttaatactgcagttgatcagtcaaat
actgcacgggagctaactttgtgtgaggctaatttgagattaacaggcaatgcagcatca
aagaagaatagccaagtcttaagttacaacagaagacgttgccggaagtctgtgtcacca
gaagctaatttaaaaccaacaggatcaccacaaagttttgagggagttaccccaagggtt
gactttactatctctccatcaatgaaaagtgatcacaaaattagtgacattactgatgct
gaaagcctgagagacgttgagatagtaaagaaggtgaataaatcaagtggtgcactcgct
cagaagagggcaagtaagctttcttcaatcagtatgaagccatccgtaagctcagaaact
ggaactgcaaatagtcctttctcaagcagggaaagtgcatctgaagcagcaacgttttct
gatcccagtagaaactctgctgaatctgtgattttaactgcaaaagaaaagtctggccaa
tctaaaagcaacctgttgagctataggagggccttgaaacttgcaaggcctgttgaagga
gaaaagctttctgaaaactctactaagagtaagaaatcactgagagaaaatacacttgca
ctgcatgaggttgacaaaggaggttctagttctgaaaatggtctaaggtctgaaaaaggt
tgtgctgcaaactcatctgccgattctgaagttgacaaaagaagttctagttcatctctt
caaaacagggacactgagatgagtgatgtgcctcaggttgacaaaactgaagttgtagct
cctaacacggattttgcaattgtggtttctcatcaaaacatggaagtggttcctaaatcg
atccaagttactgcaaccatcagtgaatgcgaaacatttccccaggaagaacctacttct
aaagtgaagaatgccagtgtcaagaggtttgggaatgcctcaaataaagcagccactaga
tctgtaaagaacaaagatgagattgtatctttcaagtctgatggtgataaagttgaggtg
caaccagaaaagaatcatgctagaccaaatggtgctgaatgtacagtattcattcctgaa
gaaatcccaaatagtaaagcaaataatgcagctaccaacaactcgcgggatgctttacag
atgaacacagcactagcactttccaagactgagttagcagagaaaaatcctggcagtgca
agtgctgatgaatatcgaaagagttcatgtgagaaggtatctcaaacagctgatgtcgag
atgcctgatgctccaattgttgatagcactggagccatgttttcaaagtcaggttttaag
gaagtgtttcctccagaaaatgcaggatcttgccctaagagactctcaaccaacacaaat
atgggtggccctgaaacatgcacccccagtattgtaccaaacaacagagtacgaaaggca
gcagccaagaggaaagtatctgctgtccagcaaaacagctttggtgatgtgccttgcaag
aacagcagtgctgttgtgtctgaatttaaatttgtgtataagagagcttcagagggtcct
agaaatggtagcaagaaaacaatggatcagaatcttcagagttccaatgaggatggggcc
agagatgccggtgtatcattttctgaagatgacatgcgagatagatcgaaaatattgcaa
aattcgcaagcaagaagcagcaaaagacaaaaggcagcagatttaatggatggttctact
gatcatgacaaggagaacctaccagggaatcataatatttccaaatcaaaatatggaaac
agttgtacgagtctgaacagttttattcaagctgcaggaagtggcaaagacaggcttgct
gaccgcggtgtggtagaagaaaacgattgtggaatgttaactgtgctggagcccagatta
tttattttgagtgggcatcgccttctgagaaaggagtataagttgatacttagacgcctg
aagggaagagtttgtagggattcgcatcaatggtctttccaagcaactcattttatctcc
cctgagctccgcagaactgaaaaattctttgcggcagctgccgctggcaggtggatacta
aagtctgattatttgactgcttgtaatgaggctgggaagttcttagaggaagaaccattt
gagtggcatggtaatggccttaacaatggtgatactataagtttggatgctcctcggaaa
tggcgccaactaaggcagcatactggccatggcgctttctacgggatgcagataattata
tacggggagtgcatttctccatcactggatacactgaagcgcgcggtgagagctggcgat
ggcaccatcttggcaacctccccaccttacacccggttcttgaagaaacctgatcacgtc
gacttcgctgttgtatctgctgggacgccaagcgcagatgcatgggtagaggagtttaag
aggcagggcattccatgcatcagcgcagattatcttgtggagtacatctgcaagccaggt
cagtccctaaacaagcatgtcctcttcaacatgcacgatctggcagacaagtcccatgcg
aagctactcaagggccagcttgacgacgtgcttggagaggcaactgaggcgatgcagctg
aaccaacttgttcggcttgtggatccaacgaccgggaaggaggactgatgctgatctgtg
gcagtggcagtgacgaggagaatggaacccggatgcatattccccttgaagctgaagctg
aagctaccccaggtgatggaggagagtggctgtgcaccagctgccacaaaaataaattcc
cccacaagtctgccaaatcaagagtgctgaaacgtagctga
DBGET
integrated database retrieval system
