Oryza sativa japonica (Japanese rice): 4344376
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Entry
4344376 CDS
T01015
Name
(RefSeq) SNF2 domain-containing protein CLASSY 1
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
4344376
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
osa03400
]
4344376
DNA repair and recombination proteins [BR:
osa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
4344376
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
SAWADEE
AAA_34
Motif
Other DBs
NCBI-GeneID:
4344376
NCBI-ProteinID:
XP_015646417
LinkDB
All DBs
Position
7:join(29703931..29703979,29704126..29704376,29704709..29706235,29706572..29706682,29707362..29707520,29707613..29709520)
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AA seq
1334 aa
AA seq
DB search
MLKGPVDHRSHPISATPFEVFYDGSWHGVNCIRIRNGNLFVKFIYSGSTVEHNVDGDCLR
LRSRRATCSDCSNVLKPGVDVCVQSSHTPEASSQGGTNASVLLRHDARLITIKKNHQEDK
CLCLFVVILYKNQCPGNAEKVITDRRAEVVTINDIFLLQKLQPEVHEGSMKWSFSKDRLS
LNKGRLISARFSSEITHLIVLSILRGMEFNIKLVEGQIVYQIIKGDQAQWNLDSMAIPPG
FGNTMEIISFQLRDEALRPTITNIPITHVKKNNITEDMRFTVKSEMDSELDRALDVEILY
EHVDLRRSKRLKTQPDRFTSYDTPRFLSGYKKKEASSSPTKHVRGAVHCDSPVDDSKKEV
ESCCVEIPGNVTQKQTGVHSPMVDEKSNSPEGQHKNTTKRTTCSLVKEKASSPEGQHEKT
TKRTTCALPVKEKASSPEGQHKNTIKRTTCSLPVKEEPSSVEIEEKSSKEQSAPEFHIPR
TPAQNKEKHNRPPFSCKPKLFTSSGTLGVNCEPAFCQKVGGKRKRHMCEREYKQMIDQCI
GNIESEMERDSMFNFDANMMNYVQHSYREEDFTWPPSADNQEVEEDELEELWKEMDYSLT
TLALLEQKQVMAQSRINMLVDNFDGLRLDCLTLTDDYRCYYQKKEKFAESGSVNESTDYF
GKVGGIPCHHECILDEELGLACRLCNVVCTEAKDIFPEMFNGNDYKDRPGCSNICLDDDI
LDPSLLANLAPELSELKNSGSVWSAISDLDPKLLPHQRKALDFLWKNLAGSIQVEGMDNS
NVSTGGCVIAHTPGSGKTLLLISFLVSYMKAHPRSRPLVLTPKAAIHTWKREFEKWGISL
PLHVFHHANRSGKPLGAMDSKLRSLLNNFHRPTWTNMRLMDSLDKLFKWHAHPSVLLMTY
SSFLGMTKQDSKVRNRYREFIAEVLMNNPGLLILDEGHNPRSNKSKLRKLLMKVKTEFRI
LLSGTAFQNNFEEYFNTLCLARPRFIGDIMSELVPERKRETVGRRAKHQEAVARRAFVEK
VGQKIESDNKHIRSDGISLLNKLTRGFIDSFEGAKLINLPGIHVYTVFMKPTDIQEEMLA
KVTMPKLGSSRFPLEVELLITIGSIHPWLIKTTKAVSTFFSPAEVKKVERYKRDFAAGCK
AKFVIDLLHKSSFRGERVLIFCHNVSPITFLVKLIEMVFGWRLGEEVLVLQGDQELPVRS
DVMDKFNGDSAGKRKVLIASTTACAEGISLTGASRLVMLDSEWNHSKTRQAIARAFRRGQ
ERTVYVYLLVASGTWEEEKYNSNRRKAWMSKMVFLGRYVDDSSQNRVTDIDDEVLKELAD
EDHTGTFHMIVKQD
NT seq
4005 nt
NT seq
+upstream
nt +downstream
nt
atgctcaagggacctgtggaccatcggagccatcccatcagtgcaactccatttgaggtg
ttttatgatggatcatggcatggggtaaattgtataaggataaggaacggcaacctgttt
gttaaatttatctactctggatcaacagtcgagcataatgttgatggggattgtctacgc
ttacggtcgagaagggcgacttgttctgattgttcaaatgttctcaagccaggtgttgat
gtctgtgtgcagtcatctcatacacccgaagcaagttcacaaggaggaacaaacgcttct
gtgttactgcgtcatgatgcaaggcttatcacaatcaagaagaatcatcaagaagataag
tgtctctgcttgtttgttgttatactctacaagaaccagtgtcctggcaatgcagaaaaa
gtgataactgatagaagagcagaggtagtaaccataaacgatattttcctcctgcaaaag
cttcaacctgaggtccatgaaggaagcatgaaatggagtttttcaaaggatcgcctctct
cttaataaaggcaggctaataagtgctagattctcctcagaaattacacatctgatagtc
ttgtcgatcttgaggggaatggaattcaacatcaaattggtagaaggccagatcgtttat
caaataatcaaaggagatcaagcacaatggaatcttgattccatggccatccctccaggc
ttcgggaatacaatggagataatatcattccaattgcgtgatgaggccttgcgcccaaca
atcacaaatatccctatcactcatgtgaaaaagaacaatatcacagaagacatgagattc
actgtgaagagtgaaatggatagtgaactggatagggcattagatgttgagatcttgtat
gagcatgtggatctgaggcgttcaaagcgcttgaagactcagccagatcgctttacaagt
tacgatacacctaggttccttagtggctacaagaagaaagaagcaagttcatcacccacc
aagcatgtaaggggagctgtgcattgtgattcaccggtagacgattccaaaaaagaagta
gaatcatgctgtgtagagattccagggaatgttacacagaagcaaacaggtgtacactct
cccatggtcgatgaaaagtcaaactctccagaaggacagcataagaacacaactaagaga
actacatgctctcttgtgaaggaaaaagcaagctctccagaaggacagcatgagaaaaca
acaaagagaactacatgcgctttgcctgtgaaggaaaaagcaagctctccagaaggacag
cataagaacacaataaagagaactacgtgctctttgcctgtgaaggaagagccaagctca
gtggaaatagaggagaaaagctcaaaagagcaaagtgcaccggagtttcacattccacgg
acacctgcacagaataaagagaagcataatcgtcctcctttctcatgtaagccgaagcta
tttacttcatcaggcacccttggtgttaactgtgaaccagcattctgccaaaaggtgggc
gggaaaagaaagaggcacatgtgcgagagagaatacaaacaaatgattgaccaatgcata
ggaaacattgagagtgaaatggagagggactctatgtttaacttcgatgccaatatgatg
aattacgttcagcattcttatcgagaagaggattttacatggccaccttctgctgataac
caagaggtggaggaggatgagcttgaagaactgtggaaagaaatggattattcactgacg
acattagcacttcttgagcaaaagcaggtgatggctcaaagtaggataaacatgctggtg
gataattttgatgggttgaggctggattgtttaactttgacggatgattacagatgctat
tatcaaaaaaaagaaaagtttgcagagtcaggatcagttaatgagagcaccgattatttt
ggaaaagttggaggaataccatgccatcatgaatgcatactggatgaggagcttggacta
gcatgcagattatgcaatgttgtatgcactgaggcaaaggatatatttccagaaatgttc
aatggaaatgactacaaggacagacctggatgcagcaatatttgccttgatgatgatata
cttgatccttctcttcttgcaaacttggcaccagagttgtcagaattgaagaactcaggg
agcgtgtggagtgcaatatctgatcttgatccaaagctgcttcctcaccagagaaaagca
ctagattttctgtggaaaaatttggcggggtcgatacaggttgaaggaatggataactca
aatgtcagtacaggtggctgtgtgatagcacacactcctggatctgggaaaacactgctg
cttatctcatttctggtgagttacatgaaagctcacccaagaagccggccattggtcctt
actccaaaagctgcaattcatacatggaagagagaatttgagaaatggggcatttcactt
cctttacatgtgttccaccatgctaacagaagtggcaagccgttgggggcaatggattct
aaactgcggtcgttattaaataattttcacagaccaacctggacaaatatgcgccttatg
gattctttggacaaactattcaagtggcatgcacatccaagcgtcctcctcatgacatac
tcatctttcttagggatgacgaaacaagactcaaaagtgcgaaaccgataccgagaattt
atcgcagaggtcctgatgaacaaccctggactcttgattcttgacgaggggcacaaccca
agaagcaacaagtccaagttgaggaagctgctgatgaaggtgaagactgagttcagaatc
ctcttatctggcacggccttccagaacaactttgaagagtacttcaacaccctatgtttg
gccagacctcggtttatcggtgatatcatgagtgaactagtgccagagaggaaaagagaa
acagttggcaggagagccaaacatcaagaagcagtggcacgccgcgcctttgtggagaaa
gtgggccagaagattgagtctgacaacaaacatatcagaagtgatggtatcagtttgcta
aacaagcttactcgtggattcatagattcattcgagggagcgaagctgatcaaccttcca
gggatacatgtgtataccgtgttcatgaagcccacggacattcaggaggagatgctggca
aaggtaacaatgcccaagctcgggtcgtcccggttccctctagaggttgagctgctcatc
acgattggctccatccatccttggctcataaaaacgacgaaggccgtcagcaccttcttc
agtccagccgaagtgaagaaggttgagaggtacaagcgagacttcgcggcggggtgcaag
gccaaatttgtgatcgatctgctgcacaagtcgtcgttcagaggggagagggtgctgata
ttctgccacaacgtgtccccgatcacgttcctggtgaagctgatagagatggtgtttggg
tggcggctcggggaggaggtgctggtgcttcagggtgatcaggagctgcctgtccggtcc
gatgtgatggacaagttcaacggcgacagcgcggggaagaggaaggtgctgatcgcgtcg
acaacggcatgcgcggaggggatcagcttgacaggcgcgtcgaggctggtgatgctggac
tcggagtggaaccactccaagacgaggcaggcgatcgcgcgggcgttccggcgtgggcag
gagaggacggtgtacgtctacctcctggtggcatctgggacatgggaggaggagaagtac
aacagcaacaggaggaaagcttggatgtccaaaatggtgttcctgggacgctatgttgat
gattcctcgcaaaaccgtgtcactgacatcgatgatgaggtcttgaaggagcttgccgat
gaagatcacaccggcaccttccatatgattgtcaagcaagactga
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