KEGG   Oryza sativa japonica (Japanese rice): 4344390
Entry
4344390           CDS       T01015                                 
Name
(RefSeq) uncharacterized protein isoform X1
  KO
K06100  symplekin
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    4344390
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:osa03021]
    4344390
   03019 Messenger RNA biogenesis [BR:osa03019]
    4344390
Transcription machinery [BR:osa03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     4344390
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     4344390
    U7-dependent histone pre-mRNA processing factors
     4344390
SSDB
Motif
Pfam: Symplekin_C SYMPK_PTA1_N HEAT_EZ HEAT_2 HEAT VirE2
Other DBs
NCBI-GeneID: 4344390
NCBI-ProteinID: XP_015646459
UniProt: Q0D3C5
LinkDB
Position
7:join(29768856..29769034,29769395..29769554,29769636..29769731,29769817..29769931,29770044..29770206,29770405..29770576,29771793..29771882,29772006..29772467,29772544..29773137,29773355..29773423,29774102..29774218,29774301..29774546,29775015..29775062,29775146..29775286,29775617..29775697,29775780..29775842,29775928..29776035,29776172..29776252,29776343..29776390,29776848..29776922,29777842..29777937,29778025..29778105,29778200..29778271,29778858..29778902,29778988..29779071,29779248..29779351,29779450..29779597)
AA seq 1245 aa
MAVAAAQDLPPTFHPNPSPLPSSMEPRLRQLRRVPLLDFVARIADLHADQASPVRKLVAE
MIGEVGSKHMAYLPNVMPCLLHLLNDDTPAVARQAIKTGTTLFAKVLRQLVIQGLFSSGG
IDDSLKLSWEALLKLKSAVSHMAFQPMSNEGARLLAIKFVEKTVLLYTPDLDTPPDPPIE
VTEDMGFNVAWLRGGHPLLNVGDLAMEASQNLGLLLEQLKPPKVKSLSTSMIIVFVTSLS
AIAQRRPSFYGRILPVLLSLDPASSIIKVQVPGAFHALKSAFAACLKCTHSSAEPWRARL
LEAQNIINQADSIEHSSNRVESLPLETTSTDNSNKRNLIDDIDNAPEDGDRSNKRIRQSH
HDQEHTENVKNNVELTSADTPSSPSNSASTGNSEAVYQLVSMFAALAAQGDRAAGSLQIL
SSSIAADLLAEVVMVNMQHLPVSHPEVDQQQSPSAGQPSGAPSSSLLSACFPLLESLLKR
INQNDREVDEAPQTIDSAVVPSAAGETAAIPAIPGPTSRNVPMEENSNSSSIPSDMETIE
AKEPTADAARLSIEIQESSEASHASTELQGTQEHGGSFISSLPADNSSAGLSLAQSSETR
SPSSSMVEASQTQFSYSSTLTSQHVLPKLVVTNIDLSDEAKDLLQKEAFLRILDCDKQDA
SGGSIARLPLLAHLGVEFPLELDPWELLQKHVLSDYVNNEGHELTLCILNRLYREAEQDQ
DFLSSRTATSVYESFLLTVAENLRDMFPASDKSLGKLLCEIPYLPEGVLKLLEGLCSPGS
NEKQDKDLQSGDRVTQGLSAVWNLIMLRPSNRDRCLEIALQSSIHHLDEVRMKAIRLVAN
KLFPMASISKRIEDFANEKLNSVLEVVPADESAASEMSTPEAPKDGGSENLSSSVADSQT
LMSLYFALCTKKHSLLRHVFAIYGSLPQAAKQAVHRQVPILIRTIGSSPSLLGIISDPPA
DSRDLLMQVLQTLTDGAMPSQDLISSVKNLYSKTKDIEVLFAVLAHLPKDEVLPVFPSIV
NLPLDKFQVALSRILQGSPQNGPSLDPSEILIAIHVIDPEKEGIPLKKVIDACAACFEQR
TIFTQQVLAKALNQLVEQIPLPLLFMRTVMQAIGAFPALVDFVMDIMSRLVSKQIWKYPK
LWVGFLKCAILTKPQSYGVLLQLPAPQLENALNKNPVLKAPLVEHANQPNVRSTLPRSTL
VVLGLAEDQQQPAPQAQSSQNQAAETSSSAADTTTEVTQESSAVS
NT seq 3738 nt   +upstreamnt  +downstreamnt
atggctgtggccgctgcccaagacctcccgccgaccttccatcccaacccctcgcctttg
ccttcctccatggagccgcgcctccgccagctccgcagggttccgctcctcgacttcgtc
gcccgcatcgccgacctccatgccgatcaggccagccccgtccgcaagctcgtcgccgag
atgattggtgaggttgggtcaaaacacatggcataccttcccaatgtcatgccttgtctg
cttcatcttctcaacgatgacacacctgcggtcgcaaggcaagctattaaaacaggaaca
accttgtttgccaaagtactacgacagctagttattcagggcttgttctcaagtggtggc
attgatgattcattaaaattatcctgggaggcactgctcaagcttaaatctgctgtgtca
cacatggcctttcagccgatgagcaatgaaggagccaggttactggctattaaatttgtt
gaaaaaacagttctattgtacacccctgatcttgataccccaccggatccaccaattgaa
gttacagaagatatgggattcaatgtagcgtggctgagaggaggtcaccctttgcttaat
gttggagatctggcaatggaagccagccagaaccttggattgctgctagaacagcttaag
cctcctaaagtaaaatcactcagtacttccatgatcattgtctttgttactagcctctca
gctatcgcgcaaagaagaccttcattttacggacgcatacttccagttttactttctttg
gatccagcaagttccattattaaagtgcaagtcccaggtgctttccatgctttgaagagt
gcctttgctgcatgcctgaaatgtacacattcaagtgcagagccgtggcgagctcgccta
ttggaagctcaaaatattatcaaccaggctgattcgatagaacattcttcaaacagggta
gaatcattgcctctggagacaacaagcacagataacagtaacaagcgtaatctgatcgat
gacatcgataatgcgccagaagatggtgatcgttccaacaaaagaattaggcaatcacat
catgatcaagaacatactgaaaatgtaaagaataatgtggagctaacctctgctgatacc
ccatctagcccgtccaactctgcaagtactggaaattctgaagctgtatatcaattagtt
agtatgtttgctgcattagccgctcaaggtgacagagcggctggatcactgcaaatcctg
tcatccagtattgctgctgacttattagcagaggtggtaatggttaacatgcaacacctg
ccagtttctcatcctgaagtagaccaacaacaatctccttcagctggccagccatctggt
gctccgagttcaagtcttctttcagcatgctttcctctgttagaatctttattgaagaga
ataaatcaaaatgatcgagaggtcgatgaagcacctcaaactatagattctgctgttgtg
ccatctgctgctggtgaaactgcagcaattcctgccattcctggacctacctcaagaaat
gtacctatggaggagaatagtaatagttcatcaattccatctgatatggaaactatagag
gctaaagaacccactgcagatgccgctaggttatcaattgagattcaagaatcatcagaa
gcttcccatgcttcaacagaacttcaaggaacccaagagcatggtggcagttttattagt
tcattgcctgctgataattcctcagctggtcttagtttggctcaatcttcagaaactcgt
agtccaagctcttctatggtggaagcaagtcagactcagttctcatattcaagcacactt
acttcacagcatgtgcttccaaagttggttgtgactaatattgatctcagcgatgaggct
aaagatctacttcaaaaagaagcatttttgcggattcttgattgtgataaacaagatgca
tctggtggttcaatagctcgtcttcccttgcttgctcacttgggtgttgagttccctttg
gagttggacccttgggagcttctccagaagcatgtactgtctgattatgtaaataatgag
ggacacgagctgacactgtgcattctgaacaggttgtatcgtgaagcagaacaggatcaa
gacttcctttcatcgagaactgcaacatcagtttatgaatcgtttcttctgactgttgct
gaaaatcttcgcgatatgtttccggcttcagataaatcacttggaaaattactttgtgag
ataccatacttaccagagggtgtattgaagttgctagagggcttatgttctcctggaagc
aatgagaagcaggacaaggatctgcagagtggtgatagggtaactcaaggacttagtgct
gtctggaaccttatcatgttaagaccttcaaatcgagacagatgtctggagatcgctttg
cagagttcaatccatcatctagatgaggtccgcatgaaggcaatacgcttggtagcaaat
aagctatttcctatggcaagcatttcaaaaaggattgaagattttgcaaatgaaaaactt
aattcagttctggaagtagttccagctgatgaatcagcagcttctgaaatgtctactcca
gaagcacccaaggatggtggttcagaaaatttatcgtcttcagtagcagattctcaaact
ttgatgtcactctattttgctttgtgcaccaagaagcattcccttcttcggcatgtattt
gcaatatatggaagtctaccacaagctgccaagcaggcagttcatcgacaagtacccatt
ctgatccgcacaataggctcatctcccagtcttcttgggatcatctcagacccaccagct
gatagtcgggacctactgatgcaggttttacagacactcaccgatggagcaatgccatct
caagatctgatttcctctgtaaagaacttatattctaaaacaaaggatatcgaggtcctt
tttgcagtcttggctcatctgccaaaagatgaggtcctccctgtttttcccagtattgtt
aatcttcccttggataagtttcaagttgcactttctcgaatcctgcagggatcaccgcag
aatgggccttctcttgatccatcagaaattttgattgcgattcatgtaatagatcctgag
aaagaaggaataccactcaaaaaggttattgatgcctgtgctgcttgttttgagcaaagg
acaatattcactcaacaagttttggcgaaagcactgaaccaactggttgaacaaattcca
cttccgttgctgtttatgcgaactgttatgcaagcaatcggtgcatttcctgcattggtg
gactttgtgatggatatcatgtcacgtcttgttagcaagcagatatggaagtatcccaag
ttatgggtaggattcctgaagtgtgctatcttgacgaaacctcagtcatatggtgtgctg
ctgcagttaccagctcctcaacttgaaaatgccttgaataagaatcctgtactgaaggca
cctttggttgagcacgcgaaccaacctaacgtacgatcaactcttccaaggtctaccttg
gtagttttgggtcttgctgaagatcaacagcaacctgcacctcaagcacaaagtagccaa
aatcaggctgcagaaaccagcagttcagctgcagatactacgacagaagtgacccaggaa
tcttccgctgttagctaa

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